View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1991_low_5 (Length: 355)

Name: NF1991_low_5
Description: NF1991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1991_low_5
NF1991_low_5
[»] chr8 (4 HSPs)
chr8 (20-343)||(28994185-28994508)
chr8 (22-133)||(31263652-31263763)
chr8 (201-269)||(9493613-9493681)
chr8 (201-239)||(36116053-36116091)
[»] chr3 (3 HSPs)
chr3 (223-343)||(44497520-44497640)
chr3 (223-327)||(29829940-29830044)
chr3 (258-334)||(2063998-2064074)
[»] chr6 (1 HSPs)
chr6 (223-327)||(1606197-1606301)
[»] chr2 (6 HSPs)
chr2 (38-202)||(4222496-4222660)
chr2 (201-334)||(19862408-19862541)
chr2 (297-334)||(19866977-19867014)
chr2 (297-334)||(19871878-19871915)
chr2 (297-334)||(19876779-19876816)
chr2 (297-334)||(36585660-36585697)
[»] chr1 (4 HSPs)
chr1 (223-330)||(22049282-22049389)
chr1 (201-239)||(50442485-50442523)
chr1 (201-242)||(51788873-51788914)
chr1 (297-333)||(48580683-48580719)
[»] chr5 (3 HSPs)
chr5 (199-267)||(39384269-39384337)
chr5 (201-267)||(39289001-39289067)
chr5 (38-122)||(41731110-41731194)
[»] chr7 (1 HSPs)
chr7 (199-239)||(8291333-8291373)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 28994508 - 28994185
Alignment:
Q  20 acacgcaactcacctgctgagtaaacaaactgataaaaatgctctgtcactcgaaaaggctctgctgaaactattcccaactaggaccgaatatgtcccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994508 acacgcaactcacctgctgagtaaacaaactgataaaaatgctctgtcactcgaaaaggctctgctgaaactattcccaactaggaccgaatatgtcccc 28994409  T
Q  120 aaattcctgcaaaaatcggacaggaaattaacagattttgggctgtttcgacctcgccgcatcccgccacacaatgatgattaggggtggacatcggacg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994408 aaattcctgcaaaaatcggacaggaaattaacagattttgggctgtttcgacctcgccgcatcccgccacacaatgatgattaggggtggacatcggacg 28994309  T
Q  220 ggttcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacggg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994308 ggttcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacggg 28994209  T
Q  320 tttgggtctttcgggccacaggtt 343  Q
    ||||||||||||||||||||||||    
T  28994208 tttgggtctttcgggccacaggtt 28994185  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 31263652 - 31263763
Alignment:
Q  22 acgcaactcacctgctgagtaaacaaactgataaaaatgctctgtcactcgaaaaggctctgctgaaactattcccaactaggaccgaatatgtccccaa 121  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||| ||||||||||||||||||||    
T  31263652 acgcaacccacctgctgagtaaacaaactgataaaaatgctctgtcactcaaaaaggttcggctgaagctattcccaaccaggaccgaatatgtccccaa 31263751  T
Q  122 attcctgcaaaa 133  Q
    | | ||||||||    
T  31263752 actgctgcaaaa 31263763  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 9493613 - 9493681
Alignment:
Q  201 taggggtggacatcggacgggttcgggagggttcgggcccaaaccttcaacccataccaacccgcggtt 269  Q
    |||||||||||||||| |||||||||| ||||||||| ||||| |  | |||||  |||||||||||||    
T  9493613 taggggtggacatcgggcgggttcgggcgggttcgggtccaaagcacccacccagcccaacccgcggtt 9493681  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 36116091 - 36116053
Alignment:
Q  201 taggggtggacatcggacgggttcgggagggttcgggcc 239  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  36116091 taggggtggacatcgggcgggttcgggcgggttcgggcc 36116053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 44497640 - 44497520
Alignment:
Q  223 tcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 322  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44497640 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttc 44497541  T
Q  323 gggtctttcgggccacaggtt 343  Q
    |||||||||||| ||| ||||    
T  44497540 gggtctttcgggtcacgggtt 44497520  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 29830044 - 29829940
Alignment:
Q  223 tcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 322  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  29830044 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttccacccatttttcttcttcggtttgtacgggttc 29829945  T
Q  323 gggtc 327  Q
    |||||    
T  29829944 gggtc 29829940  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 2063998 - 2064074
Alignment:
Q  258 caacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggtttgggtctttcggg 334  Q
    ||||||||||||||||||||   ||||||||  ||    ||||||||||||||||| ||||||| ||||||||||||    
T  2063998 caacccgcggtttgtgtgtacagacccatttaaactagcttttcttcttcggtttgcacgggttcgggtctttcggg 2064074  T

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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 1606301 - 1606197
Alignment:
Q  223 tcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 322  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1606301 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 1606202  T
Q  323 gggtc 327  Q
    |||||    
T  1606201 gggtc 1606197  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 4222660 - 4222496
Alignment:
Q  38 gagtaaacaaactgataaaaatgctctgtcactcgaaaaggctctgctgaaactattcccaactaggaccgaatatgtccccaaattcctgcaaaaatcg 137  Q
    ||||||||||| ||||||||||||| || ||||||| |||||||  ||||  |||| |||||| |||||||||| |||||||| |   | ||||||| ||    
T  4222660 gagtaaacaaattgataaaaatgctttgacactcgagaaggctcgactgaggctatccccaaccaggaccgaatgtgtccccacacagccgcaaaaaacg 4222561  T
Q  138 gacaggaaattaacagattttgggctgtttcgacctcgccgcatcccgccacacaatgatgatta 202  Q
    |||||||||| |||| || |||  |||  ||||| ||||| ||||||||||||||||| ||||||    
T  4222560 gacaggaaataaacaaatgttgaactgactcgacatcgccacatcccgccacacaatgttgatta 4222496  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 334
Target Start/End: Complemental strand, 19862541 - 19862408
Alignment:
Q  201 taggggtggacatcggacgggttcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccattttt 300  Q
    |||||||||||| ||| |||||||||| ||||||||| |  ||   || |||||   ||||||||||||||||||||   ||||||||   |    ||||    
T  19862541 taggggtggacaacgggcgggttcgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagctttt 19862442  T
Q  301 cttcttcggtttgtacgggtttgggtctttcggg 334  Q
    ||||||||||||| ||||||| ||||||||||||    
T  19862441 cttcttcggtttgcacgggttcgggtctttcggg 19862408  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 19867014 - 19866977
Alignment:
Q  297 ttttcttcttcggtttgtacgggtttgggtctttcggg 334  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  19867014 ttttcttcttcggtttgcacgggttcgggtctttcggg 19866977  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 19871915 - 19871878
Alignment:
Q  297 ttttcttcttcggtttgtacgggtttgggtctttcggg 334  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  19871915 ttttcttcttcggtttgcacgggttcgggtctttcggg 19871878  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 19876816 - 19876779
Alignment:
Q  297 ttttcttcttcggtttgtacgggtttgggtctttcggg 334  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  19876816 ttttcttcttcggtttgcacgggttcgggtctttcggg 19876779  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 36585697 - 36585660
Alignment:
Q  297 ttttcttcttcggtttgtacgggtttgggtctttcggg 334  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  36585697 ttttcttcttcggtttgcacgggttcgggtctttcggg 36585660  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 22049389 - 22049282
Alignment:
Q  223 tcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 322  Q
    ||||| |||||| ||||| |||| |||||| || ||||| ||| |||||||| |||  |||||||||| ||||||| |||||||||||||||||  |||     
T  22049389 tcgggcgggttcaggcccgaaccctcaacctatcccaactcgcagtttgtgtatagagacccatttctgcccatttctcttcttcggtttgtacaagttc 22049290  T
Q  323 gggtcttt 330  Q
    ||||||||    
T  22049289 gggtcttt 22049282  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 50442523 - 50442485
Alignment:
Q  201 taggggtggacatcggacgggttcgggagggttcgggcc 239  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  50442523 taggggtggacatcgggcgggttcgggcgggttcgggcc 50442485  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 51788914 - 51788873
Alignment:
Q  201 taggggtggacatcggacgggttcgggagggttcgggcccaa 242  Q
    ||||||||| |||||| |||||||||| ||||||||||||||    
T  51788914 taggggtgggcatcgggcgggttcgggcgggttcgggcccaa 51788873  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 48580683 - 48580719
Alignment:
Q  297 ttttcttcttcggtttgtacgggtttgggtctttcgg 333  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  48580683 ttttcttcttcggtttgcacgggttcgggtctttcgg 48580719  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 39384337 - 39384269
Alignment:
Q  199 attaggggtggacatcggacgggttcgggagggttcgggcccaaaccttcaacccataccaacccgcgg 267  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||| || |||||  | |||||||||    
T  39384337 attaggggtggacatcgggcgggttcgggcgggttcgggcccaaaccctccacccagccgaacccgcgg 39384269  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 39289001 - 39289067
Alignment:
Q  201 taggggtggacatcggacgggttcgggagggttcgggcccaaaccttcaacccataccaacccgcgg 267  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| || |||||  | |||||||||    
T  39289001 taggggtggacatcgggcgggttcgggcgggttcgggcccaaaccctccacccagccgaacccgcgg 39289067  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 41731110 - 41731194
Alignment:
Q  38 gagtaaacaaactgataaaaatgctctgtcactcgaaaaggctctgctgaaactattcccaactaggaccgaatatgtccccaaa 122  Q
    |||| ||||||||||||||||||||| | ||||||| | |||||  |||||  ||| |||||| ||||||||||||  |||||||    
T  41731110 gagtgaacaaactgataaaaatgctccgacactcgatagggctcgactgaagatatccccaacgaggaccgaatattgccccaaa 41731194  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 8291333 - 8291373
Alignment:
Q  199 attaggggtggacatcggacgggttcgggagggttcgggcc 239  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  8291333 attaggggtggacatcgggcgggttcgggcgggttcgggcc 8291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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