View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1991_low_6 (Length: 297)
Name: NF1991_low_6
Description: NF1991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1991_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 8375742 - 8376020
Alignment:
| Q |
1 |
aactttggtcattttgatattgctaattaatatgttgaatgcttaaaacccaatgtgaaggattgtagaaggatacaatacaaaaatggaatttgtaatt |
100 |
Q |
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| T |
8375742 |
aactttggtcattttgatcttgctaattaatatgttgaatgcttaaaacccaatgtgaaggattgtagaaggatacaatacaaaaatggaatttgtaatt |
8375841 |
T |
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| Q |
101 |
gtatttacatatattgtttgttatttgaatcgacaaacggtttgggtttaaataagggaacagagggtctaaggtaacgagcagaacctgtgaggtactg |
200 |
Q |
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| T |
8375842 |
gtatttacatatattgtttgttatttgaatccacaaaaggtttgggtttaaataagggaacagagggtctaaggtaacga-tggaacatgtgaggtactg |
8375940 |
T |
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| Q |
201 |
caagatgagatagctaagaaataattttaatttatgaatgagtgcaagaatacagagttttgaaggttattgaattattt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375941 |
caagatgagatagctaagaaataattttaatttatgaatgagtgcaagaatacagagttttgaaggttattgaattattt |
8376020 |
T |
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