View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_1 (Length: 565)
Name: NF19920_high_1
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 151512 - 152058
Alignment:
| Q |
1 |
aaccatctatatattgatatgatacaagtattaaagtgttctggttgctcaaaatgatcctcacatgtcacagggaaaaataatattatggcacatgcta |
100 |
Q |
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| T |
151512 |
aaccatctatatattgatatgatacaagtattaaagttttctggttgctcaaaatgatcctcacatgtcacagggaaaaataatattatggcacatgcta |
151611 |
T |
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| Q |
101 |
atacttctgctgctggtttatctgaaactgaatatgaaatggtgaaacaaatcattgacattggagtcctagaaaagttaagtttagcagaatgtagcat |
200 |
Q |
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| T |
151612 |
atacttctgctgctggtttatctgaaactgaatatgaaatggtgaaacaaatcattgacattggagtcctagaaaagttaagtttagcagaatgtagcat |
151711 |
T |
|
| Q |
201 |
ctacaaggttcctcacaatctccgaaaagtgaaacaagaagcttacactcctgaattaatctcaattggtccaattcaccttggaaatgaagaacttcaa |
300 |
Q |
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| T |
151712 |
ctacaaggttcctcacaatctccgaaaagtgaaacaagaagcttacactcctgaattaatctcaattggtccaattcaccttggaaatgaagaacttcaa |
151811 |
T |
|
| Q |
301 |
ccaatgcaagaacacnnnnnnnggtatttccttttcttctatgagcgtttatctcaattcaatcaacaatccatgatcaagatctacaaactctatctcg |
400 |
Q |
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| T |
151812 |
ccaatgcaagaacacaaaaaaaggtatttccttttcttctatgagcgtttatctcaattcaatcaacaatccatgatcaagatctacaaactctatctcg |
151911 |
T |
|
| Q |
401 |
aaagcaaagaacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcat |
500 |
Q |
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| T |
151912 |
aaagcaaagaacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcat |
152011 |
T |
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| Q |
501 |
catggaacttttgttgagaaacagttcatggaagtcggatacatcaa |
547 |
Q |
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| T |
152012 |
catggaacttttgttgagaaacagttcatggaagtcggatacatcaa |
152058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 547
Target Start/End: Original strand, 159956 - 160493
Alignment:
| Q |
10 |
tatattgatatgatacaagtattaaagtgttctggttgctcaaaatgatcctcacatgtcacagggaaaaataatattatggcacatgctaatacttctg |
109 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
159956 |
tatattgatatgatacaagtataaaagtgttctggttgctcaaaatgatcctcacatgtcacagggaaaaataatatcatggcacctgctaatacttctg |
160055 |
T |
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| Q |
110 |
ctgctggtttatctgaaactgaatatgaaatggtgaaacaaatcattgacattggagtcctagaaaagttaagtttagcagaatgtagcatctacaaggt |
209 |
Q |
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| T |
160056 |
ctgctgctttatctgaaactgaatatgaaatggtgaaaaacatcattgacattgaagttctagaagagttaagtttagcagattgtagcatctacaaggt |
160155 |
T |
|
| Q |
210 |
tcctcacaatctccgaaaagtgaaacaagaagcttacactcctgaattaatctcaattggtccaattcaccttggaaatgaagaacttcaaccaatgcaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160156 |
tcctcacaatctccgaaaagtgaaacaagaagcttacactcctcaactaatctcaattggtccaattcaccttggaaatgaagaacttcaaccaatgcaa |
160255 |
T |
|
| Q |
310 |
gaacacnnnnnnnggtatttccttttcttctatgagcgtttatctcaattcaatcaacaatccatgatcaagatctacaaactctatctcgaaagcaaag |
409 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
160256 |
caacacaaaaaaaggtatttccatttcttctatgagcgtctatctcaattcaatcaacaatccatgatcaagaactacaaactctatctcgaaaacaaag |
160355 |
T |
|
| Q |
410 |
aacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaact |
509 |
Q |
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| T |
160356 |
aacaagaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaact |
160455 |
T |
|
| Q |
510 |
tttgttgagaaacagttcatggaagtcggatacatcaa |
547 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
160456 |
tttgttgagaaacagttcatggaagtcggatacatcaa |
160493 |
T |
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Back To:
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