View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_11 (Length: 320)
Name: NF19920_high_11
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 43162447 - 43162760
Alignment:
| Q |
11 |
ttatactatcttacaaactaaaccagcaaagttttaacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgcta |
110 |
Q |
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| T |
43162447 |
ttatactatcttacaaactaaaccagcaaagttttaacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgcta |
43162546 |
T |
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| Q |
111 |
cctgtagtttttctactctatttgacccttcctttcattgttcatgctcagaacaaccaatcaggtttggtagtctcatcttgctacatattattctgc- |
209 |
Q |
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| T |
43162547 |
cctgtagtttttctactctatttgactcttcctttcattgttcatgctcagaacaaccaatcaggtttgttagtctcatcttgcaacatattattctgct |
43162646 |
T |
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| Q |
210 |
--------------------ttgcatcatgtccttagaacttaagtagtactgagccacgcacaagttaatgttgtgttcggtgtctgtgtctgtatttg |
289 |
Q |
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| T |
43162647 |
ataagactacatatatagggttgcttcatgtccttagaacttaagtagcactgagccacgcacaagttaatgttgtgttcggtgtctgtgtctgtatttg |
43162746 |
T |
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| Q |
290 |
attcagtccttcat |
303 |
Q |
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| T |
43162747 |
attcagtccttcat |
43162760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 43172226 - 43172389
Alignment:
| Q |
25 |
aaactaaaccagcaaagttttaacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgctacctgtagtttttct |
124 |
Q |
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| T |
43172226 |
aaactaaaccagcaaagttttaacatcttgtatcagattgagtgtgtaacaagttttcaaga---catatgacaggacacttgctacgtatagtgtttct |
43172322 |
T |
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| Q |
125 |
actctatttgacccttcctttcattgttcatgctcagaacaaccaatcaggtttggtagtctcatct |
191 |
Q |
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| T |
43172323 |
actttctttcgctcttccttttattgttcatgcccagaacaaccaatcaggtttggtagtctcatct |
43172389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 19576587 - 19576723
Alignment:
| Q |
55 |
tatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgctacctgtagtttttctactctatttgacccttcctttcattgttca |
154 |
Q |
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| T |
19576587 |
tatcagattgagtgtgaaacaagttttcaagttctcttatggcaagacactttcagcttatagtgtttctactttgtttgactcttcctttcattgttca |
19576686 |
T |
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| Q |
155 |
tgctcagaacaaccaatcaggtttggtagtctcatct |
191 |
Q |
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| T |
19576687 |
tgctcagaacaaccaatcaggtttgatagtctcatct |
19576723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 14503642 - 14503500
Alignment:
| Q |
46 |
aacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgctacctgtagtttttctactctatttgacccttccttt |
145 |
Q |
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||||| || ||||| |||||||||| ||||||||| |||||||| |||||||| ||||| || | | |||| |||||||| | |||||| |||||| |
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| T |
14503642 |
aacatatgatatcaaattgagtgtgaaacaagttttcaagttctccgatggcaaggcactttctgcttatagtgtttctactttctttgac---tccttt |
14503546 |
T |
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| Q |
146 |
cattgttcatgctcagaacaaccaatcaggtttggtagtctcatct |
191 |
Q |
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| T |
14503545 |
cattgttcatgttcggaagaacgaattaggtttggtagtctcatct |
14503500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 30710844 - 30710705
Alignment:
| Q |
46 |
aacatctggtatcagattgagtgtgttacaagtttttgagttctcctatggcaagacacttgctacctgtagtttttctactctatttgacccttccttt |
145 |
Q |
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|||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||| || || | | |||| ||| ||| |||||| |||||| |
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| T |
30710844 |
aacatctgatatcatattgagtgtgaaacaagttttcaagttctcctatggcaagacattttctgcttatagtgtttttac----tttgactgctccttt |
30710749 |
T |
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| Q |
146 |
cattgttcatgctcagaacaaccaatcaggtttggtagtctcatct |
191 |
Q |
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||| ||||||||||||||| |||||||||||||||| |||||||| |
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| T |
30710748 |
catagttcatgctcagaac--ccaatcaggtttggtaatctcatct |
30710705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 32520249 - 32520183
Alignment:
| Q |
143 |
tttcattgttcatgctcagaacaaccaatcaggtttggtagtctcatcttgctacatattattctgc |
209 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
32520249 |
tttcattgttcatgctcagaacaagcaatcaggtttggtggtctcatctcataacatattattctgc |
32520183 |
T |
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