View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_12 (Length: 316)
Name: NF19920_high_12
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 25068867 - 25068608
Alignment:
| Q |
21 |
ggaccacattgatctagattttttaggaatggtgaaatggattcaacacgattagctccgccaccgacgaataacatgaatttagaattgtgcctcatca |
120 |
Q |
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| T |
25068867 |
ggaccacattgatctacattttttaggaatggtgaaatggattcaacacgattagctccgccaccgacgaataacatgaatttagaattgtgcctgatca |
25068768 |
T |
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| Q |
121 |
aagaaaaatgttagtttctgtgtcacttttcccaggcttttcacctgtgagtgtaaactctgactatatatggattgggtaaattgcttaatatatttcg |
220 |
Q |
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| T |
25068767 |
aagaaaaatgttagtttctgtgtcact-----------tttcacctgtgagtgtaaactctgactatatat-gattgggtaaattgcttaatatatttcg |
25068680 |
T |
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| Q |
221 |
ccattttataaggtctatgtctttagtgaatgttttatggatttggatcatcctattataaaattttccatgaccata |
298 |
Q |
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| T |
25068679 |
ccattttataag------gtctttagtaaatgttttatggatttggatcatctcattataaaattttccatgaccata |
25068608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 271
Target Start/End: Complemental strand, 25094332 - 25094140
Alignment:
| Q |
87 |
acgaataacatgaatttagaattgtgcctcatcaaagaaaaatg------ttagtttctgtgtcacttttcccaggcttttcacc-tgtgagtgtaaa-- |
177 |
Q |
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| T |
25094332 |
acgaataacaggaattcagaactgtgcctaattaaagaaaaatgctgttcttagttcccatatcacttttcccaggtttttcaccatgcaagtgtgaact |
25094233 |
T |
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| Q |
178 |
ctctgactatatatggattgggtaaattgcttaatatatttcgccattttataaggtctatgtctttagtgaatgttttatggatttggatcat |
271 |
Q |
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| T |
25094232 |
ctctgactatatat-gattgagtgaattgcttaaaatatttcaccattttatgagttttatgtctttagtgaatgttttatagatttggatcat |
25094140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 25080119 - 25080090
Alignment:
| Q |
243 |
ttagtgaatgttttatggatttggatcatc |
272 |
Q |
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| T |
25080119 |
ttagtgaatgttttatggatttggatcatc |
25080090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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