View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_19 (Length: 275)
Name: NF19920_high_19
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 30745535 - 30745769
Alignment:
| Q |
22 |
atagattataacaagttgatagagattagttagttgaaagttaataactatttttcattagttagtcagctagagattaactcttagttagcataaccac |
121 |
Q |
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| T |
30745535 |
atagattataacaagttgatagagattagttagttgaaagttaataactagttgtcattagttagtcagctagagattaactcttagttagcataaccac |
30745634 |
T |
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| Q |
122 |
ctctatatatatacggttgctacattatacatattctatctctacaatcttctatcaaaacaatttacataattttcattcatactctctcatttttctt |
221 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30745635 |
ctctata--tatacggttgctacattatacatattctatctctacaatcttctatcaaaacaatttacataattttcattcatactctctcatttttctt |
30745732 |
T |
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| Q |
222 |
tgaaattgcaattcacctcacattagcgtgtagttct |
258 |
Q |
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||| ||||||||||||||||||||| |||||||||| |
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| T |
30745733 |
cgaagttgcaattcacctcacattagtgtgtagttct |
30745769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 30766986 - 30767220
Alignment:
| Q |
22 |
atagattataacaagttgatagagattagttagttgaaagttaataactatttttcattagttagtcagctagagattaactcttagttagcataaccac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30766986 |
atagattataacaagttgatagagattagttagttgaaagttaataactagttgtcattagttagtcagctagagattaactcttagttagcataaccac |
30767085 |
T |
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| Q |
122 |
ctctatatatatacggttgctacattatacatattctatctctacaatcttctatcaaaacaatttacataattttcattcatactctctcatttttctt |
221 |
Q |
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| T |
30767086 |
ctctata--tatacggttgctacattatacatattctatctctacaatcttctatcaaaacaatttacataattttcattcatactctctcatttttctt |
30767183 |
T |
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| Q |
222 |
tgaaattgcaattcacctcacattagcgtgtagttct |
258 |
Q |
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||| ||||||||||||||||||||| |||||||||| |
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| T |
30767184 |
cgaagttgcaattcacctcacattagtgtgtagttct |
30767220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 23510494 - 23510551
Alignment:
| Q |
197 |
tcattcatactctctcatttttctttgaaattgcaattcacctcacattagcgtgtag |
254 |
Q |
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||||||||||||||||||| | ||| ||| ||||||||||||||||||||| |||||| |
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| T |
23510494 |
tcattcatactctctcattctccttcgaagttgcaattcacctcacattagagtgtag |
23510551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 30477576 - 30477461
Alignment:
| Q |
76 |
tcattagttagtcagctagagattaactct----tagttagcataaccacctctatatatatacggttgctacattatacatattctatctctacaatct |
171 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| |||| | |||| ||||||| |||||||||||||| |
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| T |
30477576 |
tcattagttagtcagttagagattaactctatcatagttagcataatcatctctatatat----ggttattgcattgtacatatagtatctctacaatct |
30477481 |
T |
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| Q |
172 |
tcta-tcaaaacaatttaca |
190 |
Q |
| |
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|||| |||| |||||||||| |
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| T |
30477480 |
tctattcaatacaatttaca |
30477461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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