View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_20 (Length: 255)
Name: NF19920_high_20
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 37167173 - 37167406
Alignment:
| Q |
3 |
atctggtcgagagagaagaacggtgtattgatagttactgcagtaatgaaatgtaccactgagatctggtatgtgagtgagttagaatcatactcaagat |
102 |
Q |
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| T |
37167173 |
atctggtcgagagggaaaaacggtgtattgatagttactgcagtaatgaaatgtaccactgggatctggtatgtgagtgagtaagaatcatactcaagat |
37167272 |
T |
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| Q |
103 |
nnnnnnnntttttgttgaacagtaccnnnnnnnctcgtggtaatctccaattcacttttaccgttattcttaccctaatgtgataatctccaagctccca |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37167273 |
aaaaaaaaaaattgttgaacagtac-gaaaaaactcgtggtaatctccaattcacttttaccgttattcttaccctaatgtgataatctccaagctccca |
37167371 |
T |
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| Q |
203 |
ttatgattcgatatagtaggaattttgtagtatgt |
237 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37167372 |
ttatgattcgatatagtaggaattttgtagtatgt |
37167406 |
T |
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