View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_24 (Length: 227)
Name: NF19920_high_24
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55116535 - 55116314
Alignment:
| Q |
1 |
tccttctttgtgtaatttgaaggttatcaaagcaggttatcaaccaccttccatacctaacatgattgtgtatttcttgcttcaaaactaactgtctgaa |
100 |
Q |
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| T |
55116535 |
tccttctttgtgtaatttgaaggttatcaaagcaggttatcaaccaccttccatacctaacatgattgtgtatttcttgcttcaaaactaacactct-aa |
55116437 |
T |
|
| Q |
101 |
aaaagttgatatcacagcaatttattagtgctcgttgaagagtctatcaaatggtttatttgtttttgagggccaagcctattaagtgattgaaattgat |
200 |
Q |
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| T |
55116436 |
aaaagttgatatcacagcaatttattagtgctcgttgaagagtctatcaaatggtttatttgtttttgagggccaagcctattaagtgattgaaattgat |
55116337 |
T |
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| Q |
201 |
gaagaagagtaatgatttatttg |
223 |
Q |
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|||||||||||||||| |||||| |
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| T |
55116336 |
gaagaagagtaatgatatatttg |
55116314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 36627107 - 36627034
Alignment:
| Q |
74 |
ttcttgcttcaaaactaactgtctgaaaaaagttgatatcacagcaatttattagtgctcgttgaagagtctatc |
148 |
Q |
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| T |
36627107 |
ttcttgcttcaaaactcgccgtctgcaaaa-gttgatatcacaacaatttattagtgcttgttgaagagtctatc |
36627034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 36611720 - 36611642
Alignment:
| Q |
66 |
ttgtgtatttcttgcttcaaaactaactgtctgaaaaaagttgatatcacagcaatttattagtgctcgttgaagagtc |
144 |
Q |
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| T |
36611720 |
ttgtggatttcttgcatcaaaactagccgtctgaaaaaagttgtcatcacaacatttaattagtgctctttgaagagtc |
36611642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 19672743 - 19672628
Alignment:
| Q |
34 |
aggttatcaaccaccttccatacctaacatgattgtgtatttcttgcttcaaaactaactgtctgaaaaaagttgatatcacagcaatttattagtgctc |
133 |
Q |
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||||| |||| |||||||||||||| | || ||||| ||||||||| ||||||||| ||||| || ||||||| |||| | ||| || || |||||| |
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| T |
19672743 |
aggttttcaatcaccttccatacctgatgtgtttgtggatttcttgcatcaaaactagatgtcttaataaagttgtcatcaaatcaacttgttggtgctc |
19672644 |
T |
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| Q |
134 |
gttgaagagtctatca |
149 |
Q |
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| T |
19672643 |
cttgaagagtctatca |
19672628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 19656310 - 19656196
Alignment:
| Q |
33 |
caggttatcaaccaccttccatacctaacatgattgtgtatttcttgcttcaaaactaactgtctgaaaaaagttgatatcacagcaatttattagtgct |
132 |
Q |
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|||||| |||| || |||| |||||| | || ||||| ||||||||| ||||||||| ||||| || ||||||| |||| | ||||||||| ||| | |
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| T |
19656310 |
caggttttcaatcaacttctatacctgatgtgtttgtggatttcttgcatcaaaactagatgtcttaataaagttgtcatcaaaacaatttattggtgtt |
19656211 |
T |
|
| Q |
133 |
cgttgaagagtctat |
147 |
Q |
| |
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| T |
19656210 |
ctttgaagagtctat |
19656196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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