View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_3 (Length: 532)
Name: NF19920_high_3
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 51482833 - 51482328
Alignment:
| Q |
11 |
cacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
51482833 |
cacagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccattgaagtactaccctggtcaagat |
51482734 |
T |
|
| Q |
111 |
gttgcaaacaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacc |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51482733 |
gttgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacc |
51482634 |
T |
|
| Q |
211 |
caactggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
51482633 |
caactggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaaacaaacttgcacttggtttaccctactatggttataa |
51482534 |
T |
|
| Q |
311 |
gtggagattggcagatcctaataaccgtagaatttatagtaaagctacgcagggactaggggcagtgaagtacaaggatataaaaaatactggagggcag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51482533 |
gtggagattggcagatcctaataaccgtagaatttatagtaaagctacgcagggactaggggcagtgaagtacaaggatataaaaaatactggagggcag |
51482434 |
T |
|
| Q |
411 |
attgtgtacaactccacatatactcaaaattactgcttcaaaggtacagattggtatggatatgatgacactcaaagtatagctaacaaggttatttatg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51482433 |
attgtgtacaactccacatatactcaaaattactgcttcaaaggtacagattggtatggatatgatgacactcaaagtatagctaacaaggttatttatg |
51482334 |
T |
|
| Q |
511 |
ccaaac |
516 |
Q |
| |
|
|||||| |
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| T |
51482333 |
ccaaac |
51482328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 514
Target Start/End: Complemental strand, 51467921 - 51467420
Alignment:
| Q |
13 |
cagaatctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgt |
112 |
Q |
| |
|
|||| ||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51467921 |
cagagtctaggagttccgacaagccggaactgttgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgt |
51467822 |
T |
|
| Q |
113 |
tgcaaacaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaaccca |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51467821 |
tgcaaacaacttggattgggttaatgtaatgacctatgacctttacatctcagatataaatccaactcaaacacaaccacccgctcctttgaaaaaccca |
51467722 |
T |
|
| Q |
213 |
actggcttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataagt |
312 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51467721 |
actggccaatttagtgcagatgaaggtatcacaaaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataagt |
51467622 |
T |
|
| Q |
313 |
ggagattggcagatcctaataaccgtagaatttatagtaaagctacgcagggactaggggcagtgaagtacaaggatataaaaaatactggagggcagat |
412 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||| |
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|
| T |
51467621 |
ggagtttggcagatcctaataaacatagaattcatgataaagctacgcagggattaggggcagtgaagtacaaggatataaaaaatgatggggcacagat |
51467522 |
T |
|
| Q |
413 |
tgtgtacaactccacatatactcaaaattactgcttcaaaggtacagattggtatggatatgatgacactcaaagtatagctaacaaggttatttatgcc |
512 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||||||| |
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| T |
51467521 |
tgtgtacaactccacatatgctcaaaattactgcttcaaaggtacagattggtatggatatgatgacactcagagtatatctgccaaggttgcttatgcc |
51467422 |
T |
|
| Q |
513 |
aa |
514 |
Q |
| |
|
|| |
|
|
| T |
51467421 |
aa |
51467420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 48424334 - 48423861
Alignment:
| Q |
18 |
tctaggagttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgttgcaa |
117 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| | | | |||||||||| ||||| ||| |||||| |
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| T |
48424334 |
tctagcagttctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaa |
48424235 |
T |
|
| Q |
118 |
acaacttggattgggttaatgtaatgacttatgacctttacatctcagatacaaatccaactcaaacacaaccacccgctcctttgaaaaacccaactgg |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
48424234 |
acaacttggattgggtcaatgtaatgacttatgaccttttcatctcagataggtatcaaactcaaacacaaccacctgctcctttgaaaaacccaacagg |
48424135 |
T |
|
| Q |
218 |
cttgttcagtgcagatgaaggtatcaataaatgggtagggttaggtgtgccaaaaagcaaacttgcacttggtttacccttctatggttataagtggaga |
317 |
Q |
| |
|
| ||||||| |||||||||||||| |||||| | |||||||| || |||||||||||||| ||| | ||| |||| |||||||||| |||||||| |
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| T |
48424134 |
ccaattcagtgtagatgaaggtatcacaaaatggattgggttaggagttccaaaaagcaaactagcattgggtgtacctttctatggtttcaagtggagt |
48424035 |
T |
|
| Q |
318 |
ttggcagatcctaataaccgtagaatttatagtaaagctacgcagggactaggggcagtgaagtacaaggatataaaaaatactggagggcagattgtgt |
417 |
Q |
| |
|
||| ||||||||||||||| | ||||| | | ||||||| ||||| || ||||||||||||||||| ||||||| |||| ||| | |||| |||||| |
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|
| T |
48424034 |
ttgtcagatcctaataaccatgaaatttttgatcaagctacacaggggcttggggcagtgaagtacaaagatataataaatgttggggtgcaggttgtgt |
48423935 |
T |
|
| Q |
418 |
acaactccacatatactcaaaattactgcttcaaaggtacagattggtatggatatgatgacactcaaagtata |
491 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||| ||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
48423934 |
acaattccacatatgttactaattattgcttcatagggacagattggtatggatacgatgacactcagagtata |
48423861 |
T |
|
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