View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_high_4 (Length: 461)
Name: NF19920_high_4
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 47218047 - 47218275
Alignment:
| Q |
11 |
cgcagcagataaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaac |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47218047 |
cgcagcagataaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaac |
47218146 |
T |
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| Q |
111 |
gtgggtttggagctagattcacgtttggtagaagcgcttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
47218147 |
gtgggtttggagctagattcacgtttggtagaagcacttttgcagttacccaaacatcttcaaaaatggtgaaatggcatttgaacatctagactcacgt |
47218246 |
T |
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| Q |
211 |
ttgaggctggaaaacgcgtatccaaacag |
239 |
Q |
| |
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||||||||| ||||||||||||||||||| |
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| T |
47218247 |
ttgaggctgaaaaacgcgtatccaaacag |
47218275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 24771439 - 24771497
Alignment:
| Q |
29 |
gtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagct |
87 |
Q |
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|||||||||||||| ||||||||| || ||||||||||||||||| || |||||||||| |
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| T |
24771439 |
gtaaagctggaaattaatttggggtttatgcagaattgattttaatagacgcagaagct |
24771497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 2175568 - 2175796
Alignment:
| Q |
11 |
cgcagcagataaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaac |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2175568 |
cgcaccagataaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaac |
2175667 |
T |
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| Q |
111 |
gtgggtttggagctagattcacgtttggtagaagcgcttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
2175668 |
gtgggtttggagctagattcacgtttggtagaagcgcttttgcagttatccaaacatcttaaaaaatggtgaaatggcgtttgaacatctagactcacgt |
2175767 |
T |
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| Q |
211 |
ttgaggctggaaaacgcgtatccaaacag |
239 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
2175768 |
ttgagggtggaaaacgcgtatccaaacag |
2175796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 20830604 - 20830829
Alignment:
| Q |
12 |
gcagcagataaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaacg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20830604 |
gcagcagataaaaaagggtaaagctggaaataaatttgaggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaagg |
20830703 |
T |
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| Q |
112 |
tgggtttggagctagattcacgtttggtagaagcgcttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20830704 |
tgggtttggagctagattcacgtttggtagaagcgcttttgcagttacccaaac--cttcaaaaatggtgaaatggtgtttgaacatctagactcgcgtt |
20830801 |
T |
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| Q |
212 |
tgaggctggaaaacgcgtatccaaacag |
239 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
20830802 |
tgaggctggaaaacgcgtatccaaacag |
20830829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 244 - 442
Target Start/End: Original strand, 14843909 - 14844107
Alignment:
| Q |
244 |
taaataaaggccgttgcaccaccatggcagaatggcatggtggattcaatatgtgaagggtggtccaccatggtgatgcataggctgcaacattgtgttt |
343 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14843909 |
taaataaaggtcgctgcaccaccatggcagaatggcatggtggattcaatatgtgaagggtggtccaccatggtgatgcataggctgcaacattgtgttt |
14844008 |
T |
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| Q |
344 |
ataaagaaaaaatctggccttccatcatcgccatctgatggcgcttactgcaaatgcaaaagataagaaaatcattagtagtaaaagtgttgtcaatgg |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14844009 |
ataaagaaaaaatctggccttccatcatcgccatctgatgacgcttactgcaaatgcaaaagataagaaaatcattagtagtaaaagtgttgtcaatgg |
14844107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 24045398 - 24045173
Alignment:
| Q |
21 |
aaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaacgtgggtttgg |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24045398 |
aaaaaagggtaaagctggaaacaaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttatggctttgaggaaacgtgggtttgg |
24045299 |
T |
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| Q |
121 |
agctagattcacgtttggtagaagcgcttttgcagttacccaaacatctt--caaaaatggtgaaatggcgtttgaacatctagactcgcgtttgaggct |
218 |
Q |
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||||||| ||||| || | |||||||||||||||||||||||||||||| |||||||||||||| || |||||| |||| |||||| |||| || |
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| T |
24045298 |
agctagaatcacgactgattgaagcgcttttgcagttacccaaacatcttaaaaaaaatggtgaaatcgcttttgaatctctaaactcgcttttggggtc |
24045199 |
T |
|
| Q |
219 |
ggaaaacgcgtatccaaacagttact |
244 |
Q |
| |
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||||||||| || |||||||| |||| |
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| T |
24045198 |
ggaaaacgcatacccaaacaggtact |
24045173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 36547755 - 36547541
Alignment:
| Q |
25 |
aagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagctccaatttgtggctttgaggaaacgtgggtttggagct |
124 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36547755 |
aagggtaaagctggaaacaaatttggggcttttgcagaattgattttagcagccgcagaagctccaatttatggctttgaggaaacgtgggtttggagct |
36547656 |
T |
|
| Q |
125 |
agattcacgtttggtagaagcgcttttgcagttacccaaacatcttcaaaaatggtgaaatggcgtttgaacatctagactcgcgtttgaggctggaaaa |
224 |
Q |
| |
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||| ||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||| |||| | ||||||| |
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| T |
36547655 |
agaatcacggctgattgaagcgcttttgcagttacccaaacatcttaaaaaatggtgaaatggcttttgaatctctaaactcgcttttgggattggaaaa |
36547556 |
T |
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| Q |
225 |
cgcgtatccaaacag |
239 |
Q |
| |
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||||||||||||||| |
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| T |
36547555 |
cgcgtatccaaacag |
36547541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 42516422 - 42516464
Alignment:
| Q |
27 |
gggtaaagctggaaataaatttggggcttttgcagaattgatt |
69 |
Q |
| |
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||||||| ||||||||||||||||||||| |||| |||||||| |
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| T |
42516422 |
gggtaaaactggaaataaatttggggcttctgcataattgatt |
42516464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 15576162 - 15576086
Alignment:
| Q |
11 |
cgcagcagataaaaaagggtaaagctggaaataaatttggggcttttgcagaattgattttaacagccgcagaagct |
87 |
Q |
| |
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|||||||| |||||| |||||||||||||| ||||||||| || |||||||||| ||||||| |||||||||| |
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| T |
15576162 |
cgcagcaggaaaaaaatggtaaagctggaaacgaatttggggtttcaacagaattgatattaacagtcgcagaagct |
15576086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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