View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19920_low_10 (Length: 363)
Name: NF19920_low_10
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 26563590 - 26563925
Alignment:
| Q |
20 |
accagtgatcatgttattcaaattacgtgactttatatcgtctactttatacacttttcgttgtttgtttatttttctgaaagtcaattttgtagcctta |
119 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563590 |
accagtgatcatgttattcaaattacatgactttatatcgtctactttatacatttttcgttgtttgtttatttttctgaaagtcaattttgtagcctta |
26563689 |
T |
|
| Q |
120 |
taaatagataacttcgtaaa-gagtatgttaaggaagagatcaatcttctacatttacaaaatgtaaaaacttttctttggttgttttcgtagaatattt |
218 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26563690 |
taagtatataacttcgtaaaagagtatgttaaggaagagatcaatcttctacatttacaaaatgtaaaaacttttctgtggttgttttcgtagaatattt |
26563789 |
T |
|
| Q |
219 |
tgtttacctcacattattgcggtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattg |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563790 |
tgtttacctcacattatttcggtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattg |
26563889 |
T |
|
| Q |
319 |
tggacaaaaaccttgaagctgctaccgaagtattat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563890 |
tggacaaaaaccttgaagctgctaccgaagtattat |
26563925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 26558322 - 26558433
Alignment:
| Q |
239 |
ggtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattgtggacaaaaaccttgaagct |
338 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
26558322 |
ggttttgcagactgcagtcctgctttggatgcctgaccctgcaggacgcgacgtagaaatcattaggaagtctttaattgtggacaaaaatcttgaagct |
26558421 |
T |
|
| Q |
339 |
gctaccgaagta |
350 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26558422 |
gctaccgaagta |
26558433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 26551682 - 26551787
Alignment:
| Q |
245 |
tcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattgtggacaaaaaccttgaagctgctacc |
344 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| | |||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
26551682 |
tcagactgcagttctactttggttgcctgaccctgccgcacgtgatgcagaaatcattaggaagtcgctagttgtggacagaaaccttgaagctgccacc |
26551781 |
T |
|
| Q |
345 |
gaagta |
350 |
Q |
| |
|
|||||| |
|
|
| T |
26551782 |
gaagta |
26551787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 50936328 - 50936189
Alignment:
| Q |
25 |
tgatcatgttattcaaattacgtgactttatatcgtctactttatacacttttcgttgtttgtttatttttctgaaagtcaattttgtagccttataaat |
124 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||| ||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| | ||||| | |
|
|
| T |
50936328 |
tgatcatgttattcaaattacatgactttttattttcttcttaatacatttttcattgtttgtttatttttctgaaagtcaattctgtagtcatataagt |
50936229 |
T |
|
| Q |
125 |
agataacttcgtaaagagtatgttaaggaagagatcaatc |
164 |
Q |
| |
|
||||||||| |||||| || |||||| ||||||||||||| |
|
|
| T |
50936228 |
agataactttgtaaagtgtgtgttaaagaagagatcaatc |
50936189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 50936005 - 50935895
Alignment:
| Q |
240 |
gtttttcagactgcagttctgctttggatgcctgaccctgcaggacgtgacgcagaaatcattaggaagtctctaattgtggacaaaaaccttgaagctg |
339 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |||||||||||| | |||||||| |||||||| ||| ||||||| | |||||||||||||| |
|
|
| T |
50936005 |
gtttttcagactgctgttctactttggatgcctgaccatgcaggacgtgatgtggaaatcatcaggaagtcactagttgtggatagaaaccttgaagctg |
50935906 |
T |
|
| Q |
340 |
ctaccgaagta |
350 |
Q |
| |
|
||||||||||| |
|
|
| T |
50935905 |
ctaccgaagta |
50935895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University