View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19920_low_15 (Length: 310)
Name: NF19920_low_15
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 49413312 - 49413591
Alignment:
| Q |
16 |
acaacccaaatcacgaatatgcggacaacttttttgtcatgacatttactgaacaattttcttagtcgagccaacgtgcaatattacttgatgagttgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49413312 |
acaacccaaatcacgaatatgcggacaacttttttgtcatgacatttactgaacaattttcttagtcgagccaacgtgcaatattacttgatgagttgat |
49413411 |
T |
|
| Q |
116 |
atctagtgtggactccacaagaaatgtcaacattttgaactataggatctcacaatggcacgcgtatttgaaattttaggagtagttgcagtaaaaggta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49413412 |
gtctagtgtggactccacaagaaatgtcaacattttgaactatatgatctcacaatggcatgcgtatttgaaattttaggagtagttgcagtaaaaggta |
49413511 |
T |
|
| Q |
216 |
agacaaggagaaaaatatgcacttacaaattctacccttcactcatgcaatctcccttggctttctttgacaattattga |
295 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49413512 |
agacaaggagaaaaatatccacttacaaattctacccttcactcatgcaatctcccttggctttctttgacaattattga |
49413591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University