View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19920_low_17 (Length: 303)

Name: NF19920_low_17
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19920_low_17
NF19920_low_17
[»] chr1 (1 HSPs)
chr1 (1-293)||(37166879-37167173)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 37167173 - 37166879
Alignment:
Q  1 ttttgaaccctgcataaatagttaatttaatacaat-tagctaggtatataaatatgcaatag--ccaattgtctaaagccacacacaaccatctaccaa 97  Q
    |||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||   ||||| |||||||||||||||||||||||||||||    
T  37167173 ttttgaaccctgcataaatagttaatttaatacaagctagcaaagtatataaatatgcaatatatccaat-gtctaaagccacacacaaccatctaccaa 37167075  T
Q  98 ttttccatagccacttaacatgaaaacatcaactactgctattgtgtccctctttattaccctcttcatctctccctctctagcatctctcatttcctcc 197  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37167074 ttttccatagccaattaacatgaaaacatcaactaccactattgtgtccctctttattaccctcttcatctctccctctctagcatctctcatttcttcc 37166975  T
Q  198 ccaaataacacatgcaacctcacacccttcccatcattttgtttatctattctgccctctcaatatttgtccatagatcaccaaaccatattcttc 293  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  37166974 ccaaataacacatgcaaccttacacccttcccatcattttgtttatctattctgccctctcaatatttgtctatagatgaccaaaccattttcttc 37166879  T

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