View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_low_18 (Length: 289)
Name: NF19920_low_18
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 22369101 - 22368836
Alignment:
| Q |
9 |
gaagaatattttgatatcttaaagttctacactgattgtagataaaattaaatcctccatgaattcatttaagagaaacaccatagtaaacgaaatacat |
108 |
Q |
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| T |
22369101 |
gaagaatattttcatatcttaaagttctacactgattgtagataaaattaaatcctccatgaatgcatttaagagaaacaccatagtaaacgaaatacat |
22369002 |
T |
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| Q |
109 |
taaaatcatgcagaaaattgtgtaatgcaacatcttgtgtaatgcaaaatcacataattccagaaacagaaaagaatttgatgacaacgacaaagaggaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22369001 |
taaaatcatgcagaaaattgtgtaatgcaacatcttgtgtaatgcaaaatcacataattccagaaacagaaaagaatttgatgacaacaacaaagaggaa |
22368902 |
T |
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| Q |
209 |
gaaacacagtctcctctacataccgtagcagaaaatccagagtcagcacctagcactctcagatct |
274 |
Q |
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| T |
22368901 |
gaaacacagtctcctctacttaccgtagcagaaaatccagagtcagcacttagcactctcagatct |
22368836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 53260069 - 53260168
Alignment:
| Q |
22 |
atatcttaaagttctacactgattgtagataaaattaaatcctccatgaattcatttaagag-aaacaccatagtaaacgaaatacattaaaatcatgca |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
53260069 |
atatcttaaagttctacactgattgtagataaaattaaatcctccatgaatgcatttaagggcaaacaccatagtaaacgaaatacattaaaatcatgca |
53260168 |
T |
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