View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_low_19 (Length: 285)
Name: NF19920_low_19
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_19 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 24140061 - 24139807
Alignment:
| Q |
10 |
aagaatataataaatgtttagagggtaaattttggggtttgacattgactcgaagagtgcactttactttatcatatcatgtgacgggctactgcatgag |
109 |
Q |
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| T |
24140061 |
aagaaaataataaatgtttagagagtaaattttggggtttgacaccgactcgaagagtgcactttactttatcatatcatgtgacgggctactgcatgag |
24139962 |
T |
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| Q |
110 |
atgaacattggtgcactttactttgaatgattctttgtaatgtagcattatgagaaggcattaatatacaagactaatttttcaattaacatttgatact |
209 |
Q |
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| T |
24139961 |
atgaacattggtgcactttactttgaatgattctttgtaatgtagcattatgagaaggcatta--atacaagactaatttttcaattaacatttgatact |
24139864 |
T |
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| Q |
210 |
gatactgctgatattgatggatatgatgtaagtgctttgcttatataatcttagcat |
266 |
Q |
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| T |
24139863 |
gatactgctggtattgatggatatgatgtaagtactttgcttatataatcttagcat |
24139807 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 21233111 - 21233153
Alignment:
| Q |
46 |
gtttgacattgactcgaagagtgcactttactttatcatatca |
88 |
Q |
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| T |
21233111 |
gtttgacactgactcgaagagtgcactttactttatcgtatca |
21233153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 17454750 - 17454790
Alignment:
| Q |
40 |
tttggggtttgacattgactcgaagagtgcactttacttta |
80 |
Q |
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| T |
17454750 |
tttggagtttgacattgattcgaagagtgcactttacttta |
17454790 |
T |
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Target: scaffold0374 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 14657 - 14726
Alignment:
| Q |
16 |
ataataaatgtttagagggtaaattttggggtttgacattgactcgaagagtgcactttactttatcata |
85 |
Q |
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| T |
14657 |
ataataaaaatttagtgagtaaaatttggagtttggcactgactcgaaaagtgcactttaccttatcata |
14726 |
T |
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