View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19920_low_2 (Length: 564)

Name: NF19920_low_2
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19920_low_2
NF19920_low_2
[»] chr4 (6 HSPs)
chr4 (20-548)||(45772397-45772918)
chr4 (324-548)||(45778318-45778542)
chr4 (86-179)||(47710944-47711037)
chr4 (20-81)||(45772332-45772394)
chr4 (34-80)||(38709458-38709504)
chr4 (20-81)||(45778545-45778607)
[»] chr8 (4 HSPs)
chr8 (24-548)||(41828204-41828709)
chr8 (86-469)||(43306012-43306391)
chr8 (20-81)||(41828712-41828774)
chr8 (34-80)||(34666960-34667006)
[»] chr7 (3 HSPs)
chr7 (255-352)||(32606632-32606729)
chr7 (106-179)||(32606547-32606620)
chr7 (34-71)||(23633060-23633097)
[»] chr5 (1 HSPs)
chr5 (34-71)||(6903141-6903178)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 45772918 - 45772397
Alignment:
Q  20 agagactacaatctatcttcatcaagttgttcttaaaaaacacagaaaattaaaatcaaagtttaatccaccataacagcattattgaaatcggaagaag 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  45772918 agagactacaatccatcttcatcaagttgttcttaaaaaacacagaaaattaaaatcaaagttcaatccaccataacagcattatggaaatcagaagaag 45772819  T
Q  120 accaaggagctctttcattttcgtatggaaccaaaattgattgaaacattaaacaattaaaagcgagtactccaacnnnnnnnnnnnnngtaatctttgg 219  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||             ||||| |||||    
T  45772818 accaaggaactctttcattttcgtatggaaccaaaattggttgaaacagtaaacaattaacagcaagtgctccaacaaaaaaa------gtaatatttgg 45772725  T
Q  220 tttcccatatgacataactcacggaaatattgattcatgttaacttgtcaaagaactaaggtaaccccaaaatcacttcaatcataattttctccaaaaa 319  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  45772724 tttcccatatgacacaactcacggaaatattgatacatgttaacttgtcaaataactaaggtaaccccaaaatcacttcaatcataattttcttcaaaaa 45772625  T
Q  320 tgaactttcaaagttcaatcttcctgatacccagttgcatgtatgagttctcaagtcagtaaattttaaacagaaagcttgaaaataaatcaaagggtcc 419  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  45772624 tgaactttcaaagttcaatcttcccgata-ccagttgcatgtatgagttctcaagtcagtaaattttagacagaaagcttgaaaataaatcaaagggtct 45772526  T
Q  420 tnnnnnnnttggaacttgagataattagagaaagttggtgtgattcagatgtaaataagaaagaaaacatatagggtttagcattgttgttgattgatct 519  Q
    |       || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  45772525 tacaaaaatttgaacctgagataattagagaaagttggtgtgattcaaatgtaaataagaaagaaaacagaaacggtttagcattgttgttgattgatct 45772426  T
Q  520 tttaattacatgaagattgattttggatt 548  Q
    |||||||||||||||||||||||||||||    
T  45772425 tttaattacatgaagattgattttggatt 45772397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 324 - 548
Target Start/End: Original strand, 45778318 - 45778542
Alignment:
Q  324 ctttcaaagttcaatcttcctgatacccagttgcatgtatgagttctcaagtcagtaaattttaaacagaaagcttgaaaataaatcaaagggtcctnnn 423  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  45778318 ctttcaaagttcaatcttcccgatacccagttgcatgtatgagttctcaagtcagtaaattttagacagaaagcttgaaaataaatcaaagggtcctaaa 45778417  T
Q  424 nnnnttggaacttgagataattagagaaagttggtgtgattcagatgtaaataagaaagaaaacatatagggtttagcattgttgttgattgatctttta 523  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  45778418 aaaattggaacttgagataattagagaaagttggtgtgattcagatgtaaataagaaagaaaacataaagggttttgcattgttgttgattgatctttta 45778517  T
Q  524 attacatgaagattgattttggatt 548  Q
    |||||||||||||||||||||||||    
T  45778518 attacatgaagattgattttggatt 45778542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 47711037 - 47710944
Alignment:
Q  86 tccaccataacagcattattgaaatcggaagaagaccaaggagctctttcattttcgtatggaaccaaaattgattgaaacattaaacaattaa 179  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  47711037 tccaccataagagcattattgaaatcagaagaagatcaaggagctctttcattttcatatggaaccaaaattgactgaaacagtaaacaattaa 47710944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 45772332 - 45772394
Alignment:
Q  20 agagactacaatctatcttcatcaagttgttctt-aaaaaacacagaaaattaaaatcaaagt 81  Q
    ||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||    
T  45772332 agagactacaatccatcttcatcaagttgttcttaaaaaaacccataaaattaaaatcaaagt 45772394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 38709504 - 38709458
Alignment:
Q  34 atcttcatcaagttgttcttaaaaaacacagaaaattaaaatcaaag 80  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||    
T  38709504 atcttcatcaatttgttcttaaaaaacctagaaaattaaaatcaaag 38709458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 45778607 - 45778545
Alignment:
Q  20 agagactacaatctatcttcatcaagttgttcttaa-aaaacacagaaaattaaaatcaaagt 81  Q
    ||||||||||| | |||||||||||||||||||||| ||||| || ||| |||||||||||||    
T  45778607 agagactacaacccatcttcatcaagttgttcttaaaaaaacccataaagttaaaatcaaagt 45778545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 548
Target Start/End: Original strand, 41828204 - 41828709
Alignment:
Q  24 actacaatctatcttcatcaagttgttcttaaaaaacacagaaaattaaaatcaaagtttaatccaccataacagcattattgaaatcggaagaagacca 123  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||    
T  41828204 actacaatccatcttcatcaagttgttcttaaaaaacaca--aaattaaaatcaaagttcaatccaccataacaacattatggaaatcagaagaagacca 41828301  T
Q  124 aggagctctttcattttcgtatggaaccaaaattgattgaaacattaaacaattaaaagcgagtactccaacnnnnnnnnnnnnngtaatctttggtttc 223  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||             |||||||||||||||    
T  41828302 aggagctctttcatttttgtatggaaccaaaattggttgaaacaataaacaattaagagcaagtgctccaacaaaaaaaa-----gtaatctttggtttc 41828396  T
Q  224 ccatatgacataactcacggaaatattgattcatgttaacttgtcaaagaactaaggtaaccccaaaatcacttcaatcataattttctccaaaaatgaa 323  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||    
T  41828397 ccatatgacataactcacggaaatattgatacatgttaacttgtcaaagaactaaggtaaccccaaagtcacttcaatcataattttctccaaaatggaa 41828496  T
Q  324 ctttcaaagttcaatcttcctgatacccagttgcatgtatgagttctcaagtcagtaaattttaaacagaaagcttgaaaataaatcaaagggtcctnnn 423  Q
    |||||||||||||||||||| || |  |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||       
T  41828497 ctttcaaagttcaatcttcccgaca-tcagttgcatgcatgagttctcaagtcagtaaattttagacagaaagcttaaaaataaatcaaagggtcctaaa 41828595  T
Q  424 nnnnttggaacttgagataattagagaaagttggtgtgattcagatgtaaataagaaagaaaacatatagggtttagcattgttgttgattgatctttta 523  Q
        ||||||||||||||||||||||||||||||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||    
T  41828596 aaaattggaacttgagataattagagaaagttggtgtgattcaaatgtaaataagaa-----------agggtttagcattgttgttgattgatctttta 41828684  T
Q  524 attacatgaagattgattttggatt 548  Q
    |||||||||||||||||||||||||    
T  41828685 attacatgaagattgattttggatt 41828709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 86 - 469
Target Start/End: Original strand, 43306012 - 43306391
Alignment:
Q  86 tccaccataacagcattattgaaatcggaagaagaccaaggagctctttcattttcgtatggaaccaaaattgattgaaacattaaacaattaaaagcga 185  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||| ||| |    
T  43306012 tccaccataacagcattattgaaatcagaagaagaccaaggagctctttcattttcatatggaaccaaaattgattgaaatagtaaataattaacagcaa 43306111  T
Q  186 gtactccaacnnnnnnnnnnnnngtaatctttggtttcccatatgacataactcacggaaatattgattcatgttaacttgtcaaa-gaactaaggtaac 284  Q
    || |||| |              |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||| |||||||| || |    
T  43306112 gtgctccca-----acaaaaaaagtaatctttggtttcccatatgacataactcacgaaaatattgaaacatgttaacttgtcaaaagaactaagatagc 43306206  T
Q  285 cccaaaatcacttcaatcataattttctccaaaaatgaactttcaaagttcaatcttcctgatacccagttgcatgtatgagttctcaagtcagtaaatt 384  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||  |||| ||||||||||||| ||||| ||||||||||||||    
T  43306207 cccaaaatcacttcaatcatcattttctccgaaaatgaacttgcaaagttcaatcttcccaatactcagttgcatgtataagttcccaagtcagtaaatt 43306306  T
Q  385 ttaaacagaaagcttgaaaataaatcaaagggtcctnnnnnnnttggaacttgagataattagagaaagttggtgtgattcagat 469  Q
    ||| |||||||||||||||| |||||||||||||||       |||||| |||||||||| ||| ||||||| ||||||||||||    
T  43306307 ttagacagaaagcttgaaaagaaatcaaagggtcctaaaaaaattggaatttgagataatcagataaagttgatgtgattcagat 43306391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 41828774 - 41828712
Alignment:
Q  20 agagactacaatctatcttcatcaagttgttcttaa-aaaacacagaaaattaaaatcaaagt 81  Q
    ||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||    
T  41828774 agagactacaatccatcttcatcaagttgttcttaaaaaaacccataaaattaaaatcaaagt 41828712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 34666960 - 34667006
Alignment:
Q  34 atcttcatcaagttgttcttaaaaaacacagaaaattaaaatcaaag 80  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||    
T  34666960 atcttcatcaagttattcttaaaaaacccataaaattaaaatcaaag 34667006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 32606632 - 32606729
Alignment:
Q  255 catgttaacttgtcaaagaactaaggtaaccccaaaatcacttcaatcataattttctccaaaaatgaactttcaaagttcaatcttcctgataccca 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  32606632 catgttaacttgtcaaagaactaaggtaaccccaaaatcacttcaatcataattttcttcaaaaatgaactttcaaagttcaatcttcgtgataccca 32606729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 32606547 - 32606620
Alignment:
Q  106 gaaatcggaagaagaccaaggagctctttcattttcgtatggaaccaaaattgattgaaacattaaacaattaa 179  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32606547 gaaatcagaagaagatcaaggagctctttcattttcgtatggaaccaaaattgattgaaacagtaaacaattaa 32606620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 23633060 - 23633097
Alignment:
Q  34 atcttcatcaagttgttcttaaaaaacacagaaaatta 71  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  23633060 atcttcatcaagttgttcttagaaaacccagaaaatta 23633097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 6903178 - 6903141
Alignment:
Q  34 atcttcatcaagttgttcttaaaaaacacagaaaatta 71  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  6903178 atcttcatcaagttgttcttagaaaacccagaaaatta 6903141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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