View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_low_26 (Length: 225)
Name: NF19920_low_26
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_26 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 55116861 - 55116646
Alignment:
| Q |
10 |
atatcaagtgaagtgaagcccttgttaatttatctatttgtaataaatcatcagaatttgctaaaactgccaaaattaagctatctgctccaagtctttg |
109 |
Q |
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| T |
55116861 |
atatcaagtgaagtgaagcccttgttaatttatctatttgtaataaatcatcagaatttgccaaaactgccaaaattaagctatctgctccaagtctttg |
55116762 |
T |
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| Q |
110 |
tacctttacttataccagtaatcatgaggtctttattttgttgctatagccactcttccggtttcttgtcatgttttcacgcattaatttccctttcttc |
209 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55116761 |
tacttttacttataccagtaatcatgaggtctttattttgttgctatagccactcttccggtttcttgtcatgttttcacgcattaatttccctttcttc |
55116662 |
T |
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| Q |
210 |
ttaagattctttattt |
225 |
Q |
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|||||||||||||||| |
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| T |
55116661 |
ttaagattctttattt |
55116646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 36629931 - 36629979
Alignment:
| Q |
77 |
tgccaaaattaagctatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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| T |
36629931 |
tgccaaaattgagctatctgttccaagtctttgtaccttcacttttacc |
36629979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 36627456 - 36627405
Alignment:
| Q |
174 |
cttgtcatgttttcacgcattaatttccctttcttcttaagattctttattt |
225 |
Q |
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| T |
36627456 |
cttgtcatgttttaaggctttaatttttctttcttcttaagattctttattt |
36627405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 18359388 - 18359434
Alignment:
| Q |
79 |
ccaaaattaagctatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| ||| |||| |
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| T |
18359388 |
ccaaaattgagctatctgctccaattctttgtaccttttcttttacc |
18359434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 36603540 - 36603494
Alignment:
| Q |
79 |
ccaaaattaagctatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| ||| |||| |
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| T |
36603540 |
ccaaaattgagctatctgctccaattctttgtaccttttcttttacc |
36603494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 36910187 - 36910221
Alignment:
| Q |
91 |
tatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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| T |
36910187 |
tatctgctccaagtctttgtacctttacttttacc |
36910221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 20211343 - 20211295
Alignment:
| Q |
77 |
tgccaaaattaagctatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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|||||||||| || |||||| ||| ||||||||||||||||||| |||| |
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| T |
20211343 |
tgccaaaattgagttatctggtccgagtctttgtacctttacttttacc |
20211295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 19657802 - 19657757
Alignment:
| Q |
80 |
caaaattaagctatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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||||||| || ||||| || |||||||||||||||||||||||||| |
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| T |
19657802 |
caaaattgagttatctacttcaagtctttgtacctttacttatacc |
19657757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 19674641 - 19674596
Alignment:
| Q |
80 |
caaaattaagctatctgctccaagtctttgtacctttacttatacc |
125 |
Q |
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||||||| || ||||| || |||||||||||||||||||||||||| |
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| T |
19674641 |
caaaattgagttatctacttcaagtctttgtacctttacttatacc |
19674596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 25602330 - 25602379
Alignment:
| Q |
74 |
aactgccaaaattaagctatctgctccaagtctttgtacctttacttata |
123 |
Q |
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||||| ||||||| | |||||| ||||||||||| ||||||||||||||| |
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| T |
25602330 |
aactgacaaaattgaactatctactccaagtcttcgtacctttacttata |
25602379 |
T |
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