View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_low_28 (Length: 218)
Name: NF19920_low_28
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_28 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26563959 - 26564176
Alignment:
| Q |
1 |
aacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctggggatcttcaaaaggtgaggtttctgtgtaaatgccg |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26563959 |
aacagttataccattcaaaattcggtgtttatctcgagcatgaaatcgaatcaaacacttctggggatcttcaaaaggtgaggtttctgtgtaaatgcca |
26564058 |
T |
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| Q |
101 |
tttatgtcgagccagtactagaaaaagttgaaatagcaatggaaatttaaagatgaaaaatgttaaattcatctctaattaggccgtcgtcgataagtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| |
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| T |
26564059 |
tttatgtcgagccagtactagaaaaagttgaaatagcaatggaaatttaaagatgaaaaatgttaaattcatttctaattacgtcgtcgtcgataagtat |
26564158 |
T |
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| Q |
201 |
tagtgggtgaccaatttc |
218 |
Q |
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|||||||||||||||||| |
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| T |
26564159 |
tagtgggtgaccaatttc |
26564176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26551825 - 26551912
Alignment:
| Q |
1 |
aacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctggggatcttcaaaaggtgaggtttct |
88 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||| || ||||||| |||||||||||||||||| |
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| T |
26551825 |
aacagttataccattcaaagtttggcgtttatctcgagcatgaaattgaattaaacacatccggggatcatcaaaaggtgaggtttct |
26551912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 26558477 - 26558577
Alignment:
| Q |
7 |
tataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctggggatcttcaaaaggtgaggtttc--tgtgtaaatgccgttta |
104 |
Q |
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| T |
26558477 |
tataccattcaaaatttgatgtttatcttgagaaggaaattgaatcaaacacttccggggatctgcaaaaggtgaggtttcaatgtgtagatgtcgttta |
26558576 |
T |
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| Q |
105 |
t |
105 |
Q |
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| T |
26558577 |
t |
26558577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 50935857 - 50935770
Alignment:
| Q |
1 |
aacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctggggatcttcaaaaggtgaggtttct |
88 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| |
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| T |
50935857 |
aacagttataccattcaaagtttggtgtttatctcgagcatgaagtgaaatcaaacacttccggggatcttcaaaaggtaaggtttct |
50935770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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