View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_low_6 (Length: 414)
Name: NF19920_low_6
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_6 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 56069514 - 56069105
Alignment:
| Q |
1 |
agtgctgctgtaatacacactata----atggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttattggacgaagtacgttcatt |
96 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
56069514 |
agtgctgctgtaatacacactatatataatggaaatatgaaaccatggctcgagataagtattcaaaagtttcaaggttattggacgaagtacattcatt |
56069415 |
T |
|
| Q |
97 |
atgattctgtgtatttgcgagaatgcaacatccatccataataaaggtcaat-------------tgcaatccattatataatttattattctttttgta |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
56069414 |
atgattctgtgtatttgcgagaatgcaacatccatccataataaaggtcaatgcaccttataggttgcaatccattatataatttattattctttttgta |
56069315 |
T |
|
| Q |
184 |
tacatggcttgcttcgtatcagtcatttttacaaacttagtaactcgatcagtactattttatgcactgtgtgaacaatctcaaaagataacgttttctt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069314 |
tacatggcttgcttcgtatcagtcatttttacaaacttagtaactc----agtactattttatgcactgtgtgaacaatctcaaaagataacgttttctt |
56069219 |
T |
|
| Q |
284 |
tgagtcttctaactattcattcatgtttgaaattaaaaccaattgaattgtaactataataataaagatcaaggacatgatc--ataccacgtggaagca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
56069218 |
tgagtcttctaactattcattcatgtttgaaattaaaaccaattgaattttaactata---ataaagatcaaggacatgatcatataccacgtggaagca |
56069122 |
T |
|
| Q |
382 |
ataaaacagtttggtag |
398 |
Q |
| |
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||||||||||||||||| |
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| T |
56069121 |
ataaaacagtttggtag |
56069105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 56072551 - 56072508
Alignment:
| Q |
303 |
ttcatgtttgaaattaaaaccaattgaattgtaactataataat |
346 |
Q |
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| T |
56072551 |
ttcatgtttgaaattacaaccaattgaattgtaactataataat |
56072508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 38398840 - 38398961
Alignment:
| Q |
18 |
cactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgag |
117 |
Q |
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|||||||| ||||| ||||||| ||| | ||||||||||| | |||||| ||||||||||||||||||| ||| ||||||| || ||||||||||| |
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| T |
38398840 |
cactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaaaggttattggacgaagtatgttgattatgagagtgagtatttgcgag |
38398939 |
T |
|
| Q |
118 |
aatgcaacatccatccataata |
139 |
Q |
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||||||| ||| ||| |||||| |
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| T |
38398940 |
aatgcaatatcaatcaataata |
38398961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 6819 - 6862
Alignment:
| Q |
303 |
ttcatgtttgaaattaaaaccaattgaattgtaactataataat |
346 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6819 |
ttcatgtttgaaattacaaccaattgaattgtaactataataat |
6862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 10171151 - 10171266
Alignment:
| Q |
18 |
cactataatggaaatatgaaaccatggatcgagataagtattcaaaagtttcaaggttattggacgaagtacgttcattatgattctgtgtatttgcgag |
117 |
Q |
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||||| ||||| || ||||| |||||| | ||||||||||||| |||||| |||||| ||||| ||||| || | ||| || ||| |||||||||| |
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| T |
10171151 |
cactacaatgggaacatgaagccatggttggagataagtattcccaagtttagaggttactggacaaagtatgtcaactataatcatgtctatttgcgag |
10171250 |
T |
|
| Q |
118 |
aatgcaacatccatcc |
133 |
Q |
| |
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||||||||||| |||| |
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| T |
10171251 |
aatgcaacatcaatcc |
10171266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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