View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19920_low_8 (Length: 385)

Name: NF19920_low_8
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19920_low_8
NF19920_low_8
[»] chr1 (2 HSPs)
chr1 (81-371)||(10333582-10333873)
chr1 (9-64)||(10334059-10334114)
[»] chr7 (3 HSPs)
chr7 (6-52)||(37473678-37473724)
chr7 (6-52)||(15905640-15905686)
chr7 (6-48)||(42712026-42712068)
[»] chr3 (2 HSPs)
chr3 (6-63)||(13448376-13448433)
chr3 (6-63)||(2667915-2667972)
[»] chr5 (2 HSPs)
chr5 (1-64)||(29173542-29173605)
chr5 (6-64)||(16773859-16773917)
[»] chr2 (1 HSPs)
chr2 (6-52)||(33582037-33582083)
[»] chr8 (1 HSPs)
chr8 (6-50)||(40791861-40791905)
[»] chr4 (1 HSPs)
chr4 (8-64)||(4185145-4185201)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 81 - 371
Target Start/End: Complemental strand, 10333873 - 10333582
Alignment:
Q  81 aaaaagtgttgatgaagttctccatgaccttatc-aaagaaactgtatacctatacannnnnnn--gatatgaccagtataactagaagtgtgaacatat 177  Q
    |||||||| ||||||| ||||| ||||||||||| ||| |||||||||||||| |||         | |||| |||||||||||||||||||||||||||    
T  10333873 aaaaagtgctgatgaacttctcaatgaccttatccaaaaaaactgtatacctagacatttttttttggtatggccagtataactagaagtgtgaacatat 10333774  T
Q  178 attttccatagaatatctttgaagaaaatttagtaaattaaacttcnnnnnnnnngagagaagagagaagtaaattaaacttttgtatcatagactatta 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||    
T  10333773 attttccatagaatatctttgaagaaaatttagtaaattaaactt--ttctttttgagagaagagagaagtaaattaaacttttgtatcatagactatta 10333676  T
Q  278 caacatgtggttcgtagtaattatttatggcgcactttccgcacaagatcaacccatttcacattctaaccatccttccatctctcgtctgtgc 371  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  10333675 caacatgtggttcgtagtaattatttatggcgcactttccgaacaagatcaacccatctcacattctaaccatccttccatctctcgtcagtgc 10333582  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 10334059 - 10334114
Alignment:
Q  9 taaattagcccacctaaattaacattagggaaaatcgaacctgataccacgaggag 64  Q
    |||||||||||||||||||| ||||||||||||||  || |||||||| |||||||    
T  10334059 taaattagcccacctaaattgacattagggaaaataaaatctgatacctcgaggag 10334114  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 37473724 - 37473678
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacctga 52  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  37473724 agctaaattaacccacctaaattgacattagggagaatcgaacctga 37473678  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 15905640 - 15905686
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacctga 52  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||||    
T  15905640 agctaaattaacccacccaaattgacattagggagaatcgaacctga 15905686  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 42712068 - 42712026
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaac 48  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||    
T  42712068 agctaaattagcccacctaaattgacactagggagaatcgaac 42712026  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 13448433 - 13448376
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacctgataccacgagga 63  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||||||| ||| ||||||    
T  13448433 agctaaattagcccacctaaattgacagtagagaaaattgaacctgagacctcgagga 13448376  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 2667972 - 2667915
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacctgataccacgagga 63  Q
    ||||||| ||||||||||||||| ||| ||| || |||||||||||| ||| ||||||    
T  2667972 agctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgagga 2667915  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29173605 - 29173542
Alignment:
Q  1 taagtagctaaattagcccacctaaattaacattagggaaaatcgaacctgataccacgaggag 64  Q
    |||| ||||||||||||||||||||||| |||  || || |||||||||||| ||| |||||||    
T  29173605 taagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggag 29173542  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 16773917 - 16773859
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacctgataccacgaggag 64  Q
    |||||||||||||||||||||||  ||| || || |||||||||||| ||| |||||||    
T  16773917 agctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggag 16773859  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 33582083 - 33582037
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacctga 52  Q
    ||||||||||| ||||||||||| ||||||| || ||||||||||||    
T  33582083 agctaaattagtccacctaaattgacattagagagaatcgaacctga 33582037  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 40791861 - 40791905
Alignment:
Q  6 agctaaattagcccacctaaattaacattagggaaaatcgaacct 50  Q
    |||||||||||||||| |||||| ||| ||| |||||||||||||    
T  40791861 agctaaattagcccacttaaattgacactagagaaaatcgaacct 40791905  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 4185201 - 4185145
Alignment:
Q  8 ctaaattagcccacctaaattaacattagggaaaatcgaacctgataccacgaggag 64  Q
    ||||||||||||||||||||| ||| |||||| |||||| | ||| ||| |||||||    
T  4185201 ctaaattagcccacctaaattgacactagggagaatcgatcttgagacctcgaggag 4185145  T

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