View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19920_low_9 (Length: 379)
Name: NF19920_low_9
Description: NF19920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19920_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 25070458 - 25070115
Alignment:
| Q |
7 |
atgtcgaagaatatatggcagtcttcaatcatacatgttcaatagtagaggggtggacaaaactttatcatggtttttcagcatgtgggtaatgaaagtt |
106 |
Q |
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| T |
25070458 |
atgtcaaagaaaatatggcagtcttcaatcatacatgttcaatagtagaggggtgggcaaaactttatcatggtttttcagcatgtgggtaatgaaagtt |
25070359 |
T |
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| Q |
107 |
gattttgtgttgtgatttaattgagccaattgttgggtctttgatactatatgttcattaatcataaatggatgatttttggcttattcaaag--nnnnn |
204 |
Q |
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| T |
25070358 |
gattttgtgttgtgatttaattgagccaattgttgggtctttgatactatatgttcattaatcataaattgatgatttttggcttattcaaagaaaaaaa |
25070259 |
T |
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| Q |
205 |
nntggtgattataacttgatctcatgttttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttgaaggaatagttaatggta |
304 |
Q |
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| T |
25070258 |
aatggtgattataacttga--tcatgttttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttgaaggaatagttaatggta |
25070161 |
T |
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| Q |
305 |
aggtcgaacagaatcaccgtacatgcccgataaccatccgatctga |
350 |
Q |
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| T |
25070160 |
aggccgaacagaatcaccgtacatgcccgataaccatccgatctga |
25070115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 25083709 - 25083646
Alignment:
| Q |
233 |
ttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttgaaggaatagt |
296 |
Q |
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| T |
25083709 |
ttttcaccatgtgagtagtgaaatttgactcagtattttaatcgagccatgttgatggaatagt |
25083646 |
T |
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