View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_17 (Length: 358)
Name: NF19921_high_17
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 347
Target Start/End: Complemental strand, 4483199 - 4482852
Alignment:
| Q |
4 |
gattctgcatttatatttttgagcatgtactaaaccatttggggt----tctgcctctgccatataggtattatcccatcaatggaacctataatgacat |
99 |
Q |
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| T |
4483199 |
gattctgcattgatatttttgagcatgtgctaaaccatttggggtacggtctgcctcggccatataggtattatcccatcaatggaacctataatgatat |
4483100 |
T |
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| Q |
100 |
ggttcagcttgtctataacaaggtatcaaatctatcttttctttgaaatgaaatgttttattttggtttctatttgattatcattatcccccctatcaat |
199 |
Q |
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| T |
4483099 |
ggttcagcttgtctataacaaggtatcaaatctatcttttctttgaaatgaaatgttttattttggtttctattttattatcattatcccccctatcaat |
4483000 |
T |
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| Q |
200 |
tgaagactcggccctttctgtgataatgtcttcatagactagccgtcgaatatgacaaagttcatttatcattagcgattaggaacaactaataactggc |
299 |
Q |
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| T |
4482999 |
tgaagactcatccctttctgtgatgatgtcttcatagactagccgtcgaatatgacaaagttcatttatcattagcgattaggaatagtgaataactgac |
4482900 |
T |
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| Q |
300 |
attaaatgcaacttaactattttgagaattgatttgtttttatatatt |
347 |
Q |
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| T |
4482899 |
attaaatgcaacttaactattttgagaattgattgttttttatttatt |
4482852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 4488165 - 4487968
Alignment:
| Q |
4 |
gattctgcatttatatttttgagcatgtactaaaccatttggggttctgcctctgccatataggtattatcccatcaatggaacctataatgacatggtt |
103 |
Q |
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| T |
4488165 |
gattctgcattgaaatttttgagcatgtactgaaccatttggggtacga--tctgccatatagttattatcccatcgatggaacctataatgatttggtt |
4488068 |
T |
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| Q |
104 |
cagcttgtctataacaaggtatcaaatctatcttt-----tctttgaaatgaaatgttttattttggtttctatttgattatcattatcccccctatcaa |
198 |
Q |
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| T |
4488067 |
cagcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaatgcttaattttggtttctatttgattatcatcctcctccctatcaa |
4487968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 34606015 - 34606071
Alignment:
| Q |
68 |
tattatcccatcaatggaacctataatgacatggttcagcttgtctataacaaggta |
124 |
Q |
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| T |
34606015 |
tattatcccatcaacgcaacctataatgatctggttcaacttgtttataacaaggta |
34606071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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