View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19921_high_19 (Length: 318)

Name: NF19921_high_19
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19921_high_19
NF19921_high_19
[»] chr8 (1 HSPs)
chr8 (17-303)||(34864819-34865110)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 34865110 - 34864819
Alignment:
Q  17 agtttcgaatggttagaccctccctaattaattgtagtctgccgcttcacctattgggaaaactgacaataagattagtaaagagaaatatgggagtggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865110 agtttcgaatggttagaccctccctaattaattgtagtctgccgcttcacctattgggaaaactgacaataagattagtaaagagaaatatgggagtggt 34865011  T
Q  117 ggatct-----ccctcaaaatgcaaacataatgagatttgagactagagattcatccatatattgctccttgatgtttcattcagattttcaatctatta 211  Q
    |||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865010 ggatcggatccccctcaaaatgcaaacataatgagatttgagactagagattcatccatatattgctccttgatgtttcattcagattttcaatctatta 34864911  T
Q  212 aaacctttgaattcttaatcaaagccaaatttggatccaccttgaatattctcatcatctcatgtgtataaaatttcatttattcacatcat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34864910 aaacctttgaattcttaatcaaagccaaatttggatccaccttgaatattctcatcatctcatgtgtataaaatttcatttattcacatcat 34864819  T

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