View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19921_high_22 (Length: 283)

Name: NF19921_high_22
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19921_high_22
NF19921_high_22
[»] scaffold0043 (5 HSPs)
scaffold0043 (1-273)||(28737-29009)
scaffold0043 (1-273)||(43595-43867)
scaffold0043 (5-74)||(51192-51261)
scaffold0043 (94-122)||(28987-29015)
scaffold0043 (94-122)||(43845-43873)
[»] chr2 (2 HSPs)
chr2 (165-270)||(22668379-22668484)
chr2 (1-78)||(22395240-22395317)
[»] scaffold1163 (1 HSPs)
scaffold1163 (1-78)||(644-721)
[»] chr3 (7 HSPs)
chr3 (1-78)||(27388318-27388395)
chr3 (5-74)||(28085334-28085403)
chr3 (5-74)||(27980706-27980775)
chr3 (5-74)||(28006212-28006281)
chr3 (11-75)||(26631022-26631086)
chr3 (5-74)||(19482752-19482821)
chr3 (5-74)||(27350427-27350496)
[»] chr5 (2 HSPs)
chr5 (5-74)||(6164058-6164127)
chr5 (39-74)||(6164667-6164702)


Alignment Details
Target: scaffold0043 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 29009 - 28737
Alignment:
Q  1 atgcaaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaatgtaaaggaaatttacaatcca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29009 atgcaaaagagaaatcaatttcaatttggactctttgttagatacaagatggtcaagatctgatgatgagtccaacaaagtaaaggaaatttacaatcca 28910  T
Q  101 tgcaaaagagaaatcaatttcagcgtatgcaactcaagtgcaatgacatgattcttaactggattattgccaagatcattttacgcaagcaagaaaattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||    
T  28909 tgcaaaagagaaatcaatttcagcgtatgcaactcaagtgcaatgacatgattcttcacttgattattgccaagatcattctacgcatgcaagaaaattt 28810  T
Q  201 tggtaggattgatgatcttgacttaaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28809 tggtaggattgatgatcttgacttaaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 28737  T

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Target: scaffold0043; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 43867 - 43595
Alignment:
Q  1 atgcaaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaatgtaaaggaaatttacaatcca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43867 atgcaaaagagaaatcaatttcaatttggactctttgttagatacaagatggtcaagatctgatgatgagtccaacaaagtaaaggaaatttacaatcca 43768  T
Q  101 tgcaaaagagaaatcaatttcagcgtatgcaactcaagtgcaatgacatgattcttaactggattattgccaagatcattttacgcaagcaagaaaattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||    
T  43767 tgcaaaagagaaatcaatttcagcgtatgcaactcaagtgcaatgacatgattcttcacttgattattgccaagatcattctacgcatgcaagaaaattt 43668  T
Q  201 tggtaggattgatgatcttgacttaaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43667 tggtaggattgatgatcttgacttaaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 43595  T

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Target: scaffold0043; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 51192 - 51261
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    |||||||||| ||| |||||| |||| |||| | |||||| |||||||||||| |||||||| |||||||    
T  51192 aaaagagaaaacaaattcaatatggaatcttggttagatagaagatggtcaaggtctgatgaagagtcca 51261  T

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Target: scaffold0043; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 29015 - 28987
Alignment:
Q  94 caatccatgcaaaagagaaatcaatttca 122  Q
    |||||||||||||||||||||||||||||    
T  29015 caatccatgcaaaagagaaatcaatttca 28987  T

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Target: scaffold0043; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 43873 - 43845
Alignment:
Q  94 caatccatgcaaaagagaaatcaatttca 122  Q
    |||||||||||||||||||||||||||||    
T  43873 caatccatgcaaaagagaaatcaatttca 43845  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 22668379 - 22668484
Alignment:
Q  165 tattgccaagatcattttacgcaagcaagaaaattttggtaggattgatgatcttgacttaaggttaatgtggctgatcaagaatagaaccttagtcaat 264  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  22668379 tattgccaggatcattttatgcaagcaagaaaattttggtaggattgatgatcttgacttaaggttaatgtggttgatcaagaatagaactttagtcaat 22668478  T
Q  265 tggcct 270  Q
    ||||||    
T  22668479 tggcct 22668484  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22395317 - 22395240
Alignment:
Q  1 atgcaaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaa 78  Q
    |||||||||||||||||||||| |||||||||||| |  |||||||||||||||||| ||||||||||||||||||||    
T  22395317 atgcaaaagagaaatcaatttcgatttggactcttggtcagatacaagatggtcaaggtctgatgatgagtccaacaa 22395240  T

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Target: scaffold1163 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 721 - 644
Alignment:
Q  1 atgcaaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaa 78  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  721 atgcaaaagagaaatcaatttcgatttggactctttgttagatacaagatggtcaaggtctgatgatgagtccaacaa 644  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 27388318 - 27388395
Alignment:
Q  1 atgcaaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaa 78  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  27388318 atgcaaaagagaaatcaatttcgatttggactctttgttagatacaagatggtcaaggtctgatgatgagtccaacaa 27388395  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 28085403 - 28085334
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28085403 aaaagagaaatcaatttcaatttggactcttggttagatacaagatggtcaaggtctgatgatgagtcca 28085334  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 27980775 - 27980706
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    |||||| |||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  27980775 aaaagaaaaatcaattttaatttggactcttggttagatacaagatggtcaaggtctgatgatgagtcca 27980706  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 28006281 - 28006212
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    ||||||||||||| |||  |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28006281 aaaagagaaatcatttttgatttggactcttggttagatacaagatggtcaaggtctgatgatgagtcca 28006212  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 26631086 - 26631022
Alignment:
Q  11 gaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtccaa 75  Q
    |||||||||||  |||||||||||| | |||||||||||| |||||| ||||| |||||||||||    
T  26631086 gaaatcaattttgatttggactcttggttagatacaagatcgtcaaggtctgacgatgagtccaa 26631022  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 19482752 - 19482821
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    ||||| ||||||||||||  ||| ||||||| | ||||||||||||||||||| |||||| |||| ||||    
T  19482752 aaaagcgaaatcaatttctttttagactcttggttagatacaagatggtcaaggtctgataatgattcca 19482821  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 27350496 - 27350427
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    |||||||||| ||| |||||| |||| |||| | |||||| |||||||||||| |||||||| |||||||    
T  27350496 aaaagagaaaacaaattcaatatggaatcttggttagatagaagatggtcaaggtctgatgaagagtcca 27350427  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 6164127 - 6164058
Alignment:
Q  5 aaaagagaaatcaatttcaatttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 74  Q
    |||||||||||| | |||||||||||||| | | |||||| |||||||||||| ||||||||||||||||    
T  6164127 aaaagagaaatcgacttcaatttggactcgtggttagatataagatggtcaaggtctgatgatgagtcca 6164058  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 6164667 - 6164702
Alignment:
Q  39 tagatacaagatggtcaagatctgatgatgagtcca 74  Q
    ||||||||||||||||||| ||||||||||||||||    
T  6164667 tagatacaagatggtcaaggtctgatgatgagtcca 6164702  T

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