View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_25 (Length: 269)
Name: NF19921_high_25
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_25 |
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| [»] scaffold0043 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0043 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 28500 - 28760
Alignment:
| Q |
9 |
aatataatcatagaaccagaaattaccattatcataataccaattgctcctaccgtcttgataatagtgcatcgtgttgacaacaccaatgtcaagacca |
108 |
Q |
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| T |
28500 |
aatatcatcatagaaccagaaattaccattatcataataccaattgctcctaccgtctagataatagtgcatcgtgttgacaacaccaatgtcaagacca |
28599 |
T |
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| Q |
109 |
cttcttgggttaggtttgattaagagggtgtcatcagatcgaacaccatttgaactaagaacacaacctaggagggaaggatatggcagtctcttagaat |
208 |
Q |
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| T |
28600 |
tttcttgggttaggtttggttaagagggtgtcatcagatcgaacaccatttgaactaagaacacaacctaggagggaaggatatggcagtctcttaatat |
28699 |
T |
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| Q |
209 |
tatccagtttgtaagacaccatcttattatagaaaaacaaaggccaattgactaaggttct |
269 |
Q |
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| T |
28700 |
tatccagtttgtaagacaccatcttattatagaaaaacaaaggccaattgactaaggttct |
28760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 43358 - 43618
Alignment:
| Q |
9 |
aatataatcatagaaccagaaattaccattatcataataccaattgctcctaccgtcttgataatagtgcatcgtgttgacaacaccaatgtcaagacca |
108 |
Q |
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| T |
43358 |
aatatcatcatagaaccagaaattaccattatcataataccaattgctcctaccgtctagataatagtgcatcgtgttgacaacaccaatgtcaagacca |
43457 |
T |
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| Q |
109 |
cttcttgggttaggtttgattaagagggtgtcatcagatcgaacaccatttgaactaagaacacaacctaggagggaaggatatggcagtctcttagaat |
208 |
Q |
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| T |
43458 |
tttcttgggttaggtttggttaagagggtgtcatcagatcgaacaccatttgaactaagaacacaacctaggagggaaggatatggcagtctcttaatat |
43557 |
T |
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| Q |
209 |
tatccagtttgtaagacaccatcttattatagaaaaacaaaggccaattgactaaggttct |
269 |
Q |
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| T |
43558 |
tatccagtttgtaagacaccatcttattatagaaaaacaaaggccaattgactaaggttct |
43618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 22668724 - 22668464
Alignment:
| Q |
9 |
aatataatcatagaaccagaaattaccattatcataataccaattgctcctaccgtcttgataatagtgcatcgtgttgacaacaccaatgtcaagacca |
108 |
Q |
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||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22668724 |
aatatcatcataaaaccagaaatttccattatcataataccaattgcttctaccatcttgataatagtgcatcttgttgacaacaccaatgtcaagacca |
22668625 |
T |
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| Q |
109 |
cttcttgggttaggtttgattaagagggtgtcatcagatcgaacaccatttgaactaagaacacaacctaggagggaaggatatggcagtctcttagaat |
208 |
Q |
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||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||| ||| | ||||||||||| |
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| T |
22668624 |
cttcttgagttaggtttggttaagagggtgtcatttgattgaacaccatttgaactaagaacgcaacctaggaaggaaggatgtggtaatctcttagaat |
22668525 |
T |
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| Q |
209 |
tatccagtttgtaagacaccatcttattatagaaaaacaaaggccaattgactaaggttct |
269 |
Q |
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||||||| ||||||||||||||| |||| ||||||| | ||||||||||||||| ||||| |
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| T |
22668524 |
tatccaggttgtaagacaccatcctatttcagaaaaatagaggccaattgactaaagttct |
22668464 |
T |
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