View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_26 (Length: 256)
Name: NF19921_high_26
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35109031 - 35109271
Alignment:
| Q |
1 |
agatataaggatgtaaaacattgtgattggagaggattatatatcaaaagtgttattagagaggaaacaagatccaccaatggaagatgagactagtggt |
100 |
Q |
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| T |
35109031 |
agatataaggatgtaaaacattgtgatcggagaggattatatatcaaaagtgttattagagaggaaacaagatccaccaatggaagatgagactagtggt |
35109130 |
T |
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| Q |
101 |
ttggcaaaacctatggtttttgtcttgagaaggacttatgtagactacacaaccgacaagcttacaaaacaaacatcatcaaagtatgatccttnnnnnn |
200 |
Q |
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| T |
35109131 |
ttggcaaaacctatggtttttgtcttgagaaggacttatgtagactacacaaccgacaagcttacaaaacaaacatcatcaaagtatgatccttaaaaaa |
35109230 |
T |
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| Q |
201 |
ntgttttaagcatcatcatatatagtgatttaacacaaaac |
241 |
Q |
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| T |
35109231 |
atgttttaagcatcatcatatatagtgatttaacacaaaac |
35109271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 35068713 - 35068827
Alignment:
| Q |
53 |
ttattagagaggaaa-caagatccaccaatggaagatgagactagtggtttggcaaaacctatggtttttgtcttgagaaggacttatgtagactacaca |
151 |
Q |
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| T |
35068713 |
ttattagagacgaaaacaagatccaccaatggaagatgagagtagtggtttggcaaaaccaatggtttttgtcttgagaaggacttatgtagactacaca |
35068812 |
T |
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| Q |
152 |
accgacaagcttaca |
166 |
Q |
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| T |
35068813 |
accgacaagcttaca |
35068827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35068598 - 35068647
Alignment:
| Q |
1 |
agatataaggatgtaaaacattgtgattggagaggattatatatcaaaag |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068598 |
agatataaggatgtaaaacattgtgattggagaggattatatatcaaaag |
35068647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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