View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_high_27 (Length: 255)
Name: NF19921_high_27
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_27 |
 | |
|
| [»] scaffold0066 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 386835 - 386740
Alignment:
| Q |
148 |
gatgcttatgttgtacagtacttaaaaacaactcttatagattaatcgttttaaaatgaatttttgagccaataaaattttagtttatagtataat |
243 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
386835 |
gatgcttatgttgtaccgtatttaaaaacaactcttatagattaatcgttttaaaatgaatctgtgacccaataaaattttagtttatagtataat |
386740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 46541364 - 46541451
Alignment:
| Q |
156 |
tgttgtacagtacttaaaaacaactcttatagattaatcgttttaaaatgaatttttgagccaataaaattttagtttatagtataat |
243 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
46541364 |
tgttgtacaatacttaaaaacaactcttatagattaatcgttttaaaatgaatttttgacccaataaaattttagtttatcgtataat |
46541451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 9501 - 9598
Alignment:
| Q |
19 |
tctgtgttctctcaaacggcgaagaagaacgccgaccgtgctgctcacggcggaatcgccgccggccgtttctatcttcctcgctatcgctctctctc |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | | |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9501 |
tctgtgttctctcaatcggcgaagaagaacgccggctgggctgctcacgacggaatcgccgccggccctttctctcttcctcgctatcgctctctctc |
9598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 21554880 - 21554977
Alignment:
| Q |
19 |
tctgtgttctctcaaacggcgaagaagaacgccgaccgtgctgctcacggcggaatcgccgccggccgtttctatcttcctcgctatcgctctctctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| |||| || || |||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
21554880 |
tctgtgttctctcaaacggcgaagaagaacgccggccgggctgcgcacgacgaaaacgccgccgaccctttctctcttcctcgctatcgctctctctc |
21554977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 27020880 - 27020977
Alignment:
| Q |
148 |
gatgcttatgttgtacagtacttaaaaacaactcttatagatta--atcgttttaaaatgaatttttgagccaataaaattttagtttatagtataatat |
245 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| |||| ||| ||||| | ||||||| ||| |||||||||||| || ||||||||||||| |
|
|
| T |
27020880 |
gatgcctatattgtacagtacttaaaaacaactcttataaattaatatcattttatactgaatttgtgaaccaataaaatttcag--tatagtataatat |
27020977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 31619294 - 31619219
Alignment:
| Q |
169 |
ttaaaaacaactcttatagattaatcgttttaaaatgaatttttgagccaataaaattttagtttatagtataatat |
245 |
Q |
| |
|
||||||||||||||| || |||||| ||||||| ||||||||||| |||| |||||| |||| || ||||||||| |
|
|
| T |
31619294 |
ttaaaaacaactcttgtaaattaatatttttaaagtgaatttttgaaccaaataaatttaagttaat-gtataatat |
31619219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University