View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_29 (Length: 251)
Name: NF19921_high_29
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_29 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 170194 - 169954
Alignment:
| Q |
1 |
ttatgaatgaactttggtcataatatcttacatattcatcagcaatcatgaaaccatgacatcgtaaagttagactatcaatgaaacttgcatcagaagg |
100 |
Q |
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| T |
170194 |
ttatgaatgaactttggtcataatatcttacatattcatcagcaatcatgaaaccatgacatcgtaaagttagaatatcaatgaaacttgcatcagaagg |
170095 |
T |
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| Q |
101 |
ctagaatcatgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtga |
200 |
Q |
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| T |
170094 |
ctagaatcatgacagttacataaaagatgagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtga |
169995 |
T |
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| Q |
201 |
tgcaagcaatggtacctcttatatttgagttgatgtctgtg |
241 |
Q |
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| T |
169994 |
tgcaagcaatggtacctcttatatttgagttgatgtctgtg |
169954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31053055 - 31053295
Alignment:
| Q |
1 |
ttatgaatgaactttggtcataatatcttacatattcatcagcaatcatgaaaccatgacatcgtaaagttagactatcaatgaaacttgcatcagaagg |
100 |
Q |
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| T |
31053055 |
ttatgaatgaattttggtcataatatcttacatattgatcagcaatcatgaaaccatgacatcgtaaagttagaatatcaatgagacttgcatcagaagg |
31053154 |
T |
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| Q |
101 |
ctagaatcatgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtga |
200 |
Q |
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| T |
31053155 |
ctagaatcatgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtga |
31053254 |
T |
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| Q |
201 |
tgcaagcaatggtacctcttatatttgagttgatgtctgtg |
241 |
Q |
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| T |
31053255 |
tgcaagcaatggtacctcttatatttgagttgatgtctgtg |
31053295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 5380201 - 5380313
Alignment:
| Q |
44 |
aatcatgaaaccatgacatcgtaaagttagactatcaatgaaacttgcatcagaaggctagaatc-atgacagttacataaaagaggagataaatagaaa |
142 |
Q |
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| T |
5380201 |
aatcatgaaaccataacaacataaagttagaatatcaatcaaacttgcaccagaaggctagaatcaatgacagttac---acagaggagataaatagcaa |
5380297 |
T |
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| Q |
143 |
gaaaatatatatctct |
158 |
Q |
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| T |
5380298 |
gaaaatatatacctct |
5380313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5345315 - 5345212
Alignment:
| Q |
1 |
ttatgaatgaactttggtcataatatcttacatattcatcagca---atcatgaaaccatgacatcgtaaagttagactatcaatgaaacttgcatcaga |
97 |
Q |
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||||||||||||||||||||| ||| ||||||||| | | || ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
5345315 |
ttatgaatgaactttggtcatgttatgttacatatttttaatcacggatcatgaaaccatgacaacattaagttagaatatcaatcaaacttgcatcaga |
5345216 |
T |
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| Q |
98 |
aggc |
101 |
Q |
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|||| |
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| T |
5345215 |
aggc |
5345212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 5364265 - 5364313
Alignment:
| Q |
53 |
accatgacatcgtaaagttagactatcaatgaaacttgcatcagaaggc |
101 |
Q |
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| T |
5364265 |
accatgacaacataaagttagaatatcaatcaaacttgcatcagaaggc |
5364313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 6428 - 6481
Alignment:
| Q |
169 |
ttagctactaaactacattgaaattattgtgatgcaagcaatggtacctcttat |
222 |
Q |
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| T |
6428 |
ttagctactaacctacaatgaaatgattctgatgcaagcattggtacttcttat |
6481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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