View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_32 (Length: 241)
Name: NF19921_high_32
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 52435356 - 52435148
Alignment:
| Q |
14 |
attatacttaacgagtaaaagtaactctagaatttattttttgaaagaactctataatttgttctctctggcatttttaagaccggcaataaagtttata |
113 |
Q |
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| T |
52435356 |
attatacttaacgagtaaaagtaactctagaatttattttttgaaagaactctataatttcttctctatggcatttttaagacaggcaataaagtttata |
52435257 |
T |
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| Q |
114 |
attaaataaataattgttgaaatgtaagaatatcaagctaacataagacagatttagtttgtacacnnnnnnnntcgactcacactcaggaagatactat |
213 |
Q |
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| T |
52435256 |
attaaataaataattgttgaaatgtaagaatatcaggctaacataagatagatttagtttgtacacaaaaaaaatcgactcacactcaggatgatactat |
52435157 |
T |
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| Q |
214 |
agcacgacc |
222 |
Q |
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||||||||| |
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| T |
52435156 |
agcacgacc |
52435148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 52433754 - 52433631
Alignment:
| Q |
14 |
attatacttaacgagtaaaagtaactctagaatttatttttt---------gaaagaactctataatttgttctctctggcatttttaagaccggcaata |
104 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||| ||||| ||||| | |||||| |
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| T |
52433754 |
attatacttaacgagtaaaagtaactctacaatttgtttttttttttttttgaaagaactctataatttgttctttctatcatttgtaagatctgcaata |
52433655 |
T |
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| Q |
105 |
aagtttataattaaataaataatt |
128 |
Q |
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||| ||||| |||||||||||||| |
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| T |
52433654 |
aagattatacttaaataaataatt |
52433631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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