View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_5 (Length: 470)
Name: NF19921_high_5
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Original strand, 31536298 - 31536744
Alignment:
| Q |
10 |
attatacttatttggtgactcaacatttgatgtaggaactaacaattttctcaactctaaaacaaaagcaaatagcccttattatgggattgattttcac |
109 |
Q |
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| T |
31536298 |
attatacttatttggtgactcaacatttgatgtaggaactaacaattttctcaactctaaaacaaaagcaaatagcccttattatgggattgattttcac |
31536397 |
T |
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| Q |
110 |
atttcatttcccacaggaaggtttagcaatggtctcaacactgctgaccaaattggtaaataaatttggacaatgttgaattttcatataaataaaatat |
209 |
Q |
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| T |
31536398 |
atttcatttcccacaggaaggtttagcaatggtctcaacactgctgaccaaattggtaaataaatttggacaatgttgaattttcatataaataaaatat |
31536497 |
T |
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| Q |
210 |
cttatgagatttcattgattatgttgcattaattgtttttcttttgtgaaaactagctaggcaattcggttatacgaaaagtccaccgtcatatttggat |
309 |
Q |
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| T |
31536498 |
cttatgagatttcattgattatgttgcattaattgtttttcttttgtgaaaactagctaggcaattcggttatacgaaaagtccaccgtcatatttggat |
31536597 |
T |
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| Q |
310 |
ttggagaaacttcaatatactttcaagcagaatattatggttggtgtgaattttgcatcagggggttctggaattcttagatatacagggtacaaacaat |
409 |
Q |
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| T |
31536598 |
ttggagaaacttcaatatactttcaagcagaatattatggttggtgtgaattttgcatcagggggttctggaattcttagatatacagggtacaaacaat |
31536697 |
T |
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| Q |
410 |
cggtaacnnnnnnngattttgattacattattattagtactagttagt |
457 |
Q |
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| T |
31536698 |
cggtaac-ttctttgattttgattacattattattagtactagttagt |
31536744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 31533064 - 31532913
Alignment:
| Q |
20 |
tttggtgactcaacatttgatgtaggaactaacaattttctcaactctaaaacaaaagcaaatagcccttattatgggattgattttcacatttcatttc |
119 |
Q |
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| T |
31533064 |
tttggtgactcaacatttgatgttggaaccaacaattttatcaactctactgcaaaagccaatgtcccttattatggaattgattttccttattcagttg |
31532965 |
T |
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| Q |
120 |
ccacaggaaggtttagcaatggtctcaacactgctgaccaaattggtaaata |
171 |
Q |
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| T |
31532964 |
ccactggaaggttcagcaatggactcaacactgctgaccaaataggtaaata |
31532913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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