View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_8 (Length: 436)
Name: NF19921_high_8
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 49534277 - 49533862
Alignment:
| Q |
17 |
agtatcttagtatgtatataatcctgtgggtgagtgatttaaatggctggacatatctattgaaataatattattcatagatattcttttctaattaaca |
116 |
Q |
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| T |
49534277 |
agtatcttagtatgtatataatcctgtgggtgagtgatttaaatggctggacatatctattgaaataatattattcatagatattcttttctaattaaca |
49534178 |
T |
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| Q |
117 |
attctctaatgcactttctttttcagaggaaaattactaaagagataatcttgagaattattccagcagaggtccatagctaagaggacatggtccaaag |
216 |
Q |
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| T |
49534177 |
attctctaatgcactttctttttcagaggaaaattactaaagagataatcttgagaattattccagcagaggtccatagctaagaggacatggtccaaag |
49534078 |
T |
|
| Q |
217 |
gtgaacatcaattaataaaaatgaatggcctatattaggcatgccattactgcgagtgatacatttgtaaggccaaagtattgaagactacagatatttg |
316 |
Q |
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| T |
49534077 |
gtgaacatcaattaataaaaatgaatggcctatattaggcatgtcattactgcgagtgatacatttgtaaggccaaaatattgaagactacagatatttg |
49533978 |
T |
|
| Q |
317 |
taagattgtagggtatatgagataatgtattcatacacaaatagttgattgccgtcgttacgacgccattccggtacccttcaagactgctctccgtttc |
416 |
Q |
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| T |
49533977 |
taagattgtagggtatatgagataatgtattcatacacaaatagttgattgtcgtcgttacgacgccattccggtacccttcaagactgctctccgtttc |
49533878 |
T |
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| Q |
417 |
ccttcctttgctactc |
432 |
Q |
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| T |
49533877 |
ccttcccttgttactc |
49533862 |
T |
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