View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_high_9 (Length: 420)
Name: NF19921_high_9
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 225 - 378
Target Start/End: Complemental strand, 6358491 - 6358338
Alignment:
| Q |
225 |
ttcagagatacattacgagagagtcaaatccacaaaaacatcataaccgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtc |
324 |
Q |
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| T |
6358491 |
ttcagagatacattacgagagagtcaaatccacaaaaacatcataaccgtatctaaaacaaaatgtgtaaatccccataagcttaaccttgtgagtggtc |
6358392 |
T |
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| Q |
325 |
tgtaatccccatatcattatcaactaatttatgttttgaagcataaacctttgg |
378 |
Q |
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| T |
6358391 |
tgtaatccccatatcattatcaactaatttatgttttgaagcataaacctttgg |
6358338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 6358745 - 6358531
Alignment:
| Q |
19 |
attattgcaaatggtaacttctacttagacgagataaaaaata--------aaacacatacctcagttcctttg-----atgctacaaatcacctactga |
105 |
Q |
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| T |
6358745 |
attattgcaaatggtaacttctacttagacgagataaaaaaaataaaaaaaaaacacatacctcagttcctttgggtacatgctgcaaatcacctactga |
6358646 |
T |
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| Q |
106 |
tgctatctttccctcaaaagccaacactgaattgggcaa-gcatgcagctatatgataaaatcatgattagaaaaataacaaagaaatgggataataaga |
204 |
Q |
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| T |
6358645 |
tgctatctttccctcaaaagccaacactgaattgggcaaagcatgcagctatatgataaaatcatgattagaaaaataacaaagaaatgggataataaga |
6358546 |
T |
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| Q |
205 |
cgtcacaaatggtat |
219 |
Q |
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| T |
6358545 |
cgtcacaaatggtat |
6358531 |
T |
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