View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_low_1 (Length: 679)
Name: NF19921_low_1
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 253 - 576
Target Start/End: Original strand, 29262022 - 29262360
Alignment:
| Q |
253 |
tacctatcatttggtgtaatttttgtacatctttcttggcacctcattgaataacctcttcatccttttatatactataaggtggatatggaatcaataa |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29262022 |
tacctatcatttggtgtaatttttgtacatctttcttggcacctcattgaataacctcttcatccttttatata-----aggtggatatggaatcaataa |
29262116 |
T |
|
| Q |
353 |
agtcctttattattatttgtactctagaaagaaatacaacttggttgactttaacatattgtgag-----------------gacttaacatgttgctga |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
29262117 |
agtcctttattattatttgtactctagaaagaaatacaacttggctgactttaacatattgtgaggacttaacatatggaatgacttaacatgttactga |
29262216 |
T |
|
| Q |
436 |
tctccctatatgctgtgtttgtactttgtagctttgcggtagtaagtagtaggtggaaagtggtccccaacaaaaaacttattgttgctgatatttttgt |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29262217 |
tctccctatatgctgtgtttgtacttagtagctttgcggtagtaagtagtaggttgaaagtggtccccaacaaaaaacttattgttgctgatatttttgt |
29262316 |
T |
|
| Q |
536 |
tatc---taatatctataattttgtatgagttattggtttaata |
576 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29262317 |
tatctaataatatctataattttgtatgagttattggtttaata |
29262360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 29261787 - 29261968
Alignment:
| Q |
18 |
atgaataactaaatctcaaggcattgcttgtgcaattgcgttggaatgcaatcaagaacaaacatgaaagtgactattattgaagttaggaattattcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29261787 |
atgaataactaaatctcaaggcattgcttgtgcaattgcgttggaatgcaatcaagaacaaacatgaaagtgactattattgaagttaggaattattcct |
29261886 |
T |
|
| Q |
118 |
cttttgctgctaccgaaccaatgtcctaagcttaccaactagaatctggtttgtatgtggctgttgttagtgtaataataca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29261887 |
cttttgctgctaccgaaccaatgtcctaagcttaccaactagaatctggtttgtatgtggctgttgttagtgtaataataca |
29261968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 513 - 635
Target Start/End: Complemental strand, 29258548 - 29258423
Alignment:
| Q |
513 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaacct---tccttgtgtaatttcattatgc |
609 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
29258548 |
cttattattgctgatatttttgttatctaatctctataattttgtatgagttattggtttatttattgtcaaccttcctccttgtataatttcaatatgc |
29258449 |
T |
|
| Q |
610 |
tttgtaaacatcttggtagtagcttt |
635 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
29258448 |
tttgtagacatcttggtagtagcttt |
29258423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 513 - 629
Target Start/End: Original strand, 29286540 - 29286658
Alignment:
| Q |
513 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaac---cttccttgtgtaatttcattatgc |
609 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||| | |||| |||| |||||||||||||||||| ||||| |
|
|
| T |
29286540 |
cttattgttgcggatatttttgttat-tgatatctataattttgcatgagttattggtttacttattgccaaccttcttccttgtgtaatttcaatatgc |
29286638 |
T |
|
| Q |
610 |
tttgtaaacatcttggtagt |
629 |
Q |
| |
|
| |||| ||||||||||||| |
|
|
| T |
29286639 |
tatgtagacatcttggtagt |
29286658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 513 - 589
Target Start/End: Original strand, 35234991 - 35235067
Alignment:
| Q |
513 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaaccttc |
589 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
35234991 |
cttattgttgctgatatttttgttatctgatatctataattttgtatgagttattggtttacttattgccaaccttc |
35235067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University