View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_11 (Length: 419)
Name: NF19921_low_11
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 31268714 - 31268334
Alignment:
| Q |
20 |
taaagctcttgcatatgcatgatctgaaaatggtcataccgattaatgtattatttacaatcttaccctatattttacacaaaagattgtttccaagatt |
119 |
Q |
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| T |
31268714 |
taaagctgttgcatacgcatgatttggaaatggccataccgattagtgtattatttgcaatcttaccctatattttacacaaaaggttgtttctaagatt |
31268615 |
T |
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| Q |
120 |
taaattcatgacatttcaatcacgtc-caataatattatcattgcgtcaaaactccccttcatattaatatttaatcaaaattcttaaagtaacgttact |
218 |
Q |
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| T |
31268614 |
taaactcatgacatttcagtcacgtgacaataatattatcattgcgtcaaaactccccttcatattaatatttaatcaaaattctcaaagtaacgttact |
31268515 |
T |
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| Q |
219 |
tactgaagttattgtgatgccaccttatcgaacctatgatgatccccaaggttgaattagtgaaaaactatgtgtcagagtgtgtggaacgaaaaaccat |
318 |
Q |
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| T |
31268514 |
tactgaagtcattgtgatgccaccttatcgaacctatgatgatccccaaggttgaactagtgaaaaactatgtgtcacagtgtgtggaacgaaaaaccat |
31268415 |
T |
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| Q |
319 |
gtgttagtttgtcaaactcaacaaatatatcttgttagaggtgctcttggagtttcccatttagaggcagtttaataacatt |
400 |
Q |
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| T |
31268414 |
gtgttagtttgtcaaactcaacaaatatatcttgttagaggtgctcttggagtttcccatttagaggcag-ttaataacatt |
31268334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 10250413 - 10250364
Alignment:
| Q |
92 |
ttttacacaaaagattgtttccaagatttaaattcatgacatttcaatca |
141 |
Q |
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| T |
10250413 |
ttttacacaagagattgtttccaagacttatatttatgacatttcaatca |
10250364 |
T |
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