View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_low_14 (Length: 376)
Name: NF19921_low_14
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 132 - 358
Target Start/End: Original strand, 32371530 - 32371752
Alignment:
| Q |
132 |
atgtctagagactaagattgtgattatcaatcactagaagctggataatatcgttcactagaaggnnnnnnnnnngaatctagtttgtgaggtactcttt |
231 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32371530 |
atgtcaagagactaagattgtgattatcgatcactagaagctggataatatcgatcactagaaggaaaaaaaa---aatctagtttgtgaggtactcttt |
32371626 |
T |
|
| Q |
232 |
acacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32371627 |
acacaaattgactggccttttatgcatcaaaa-atgttagcttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattca |
32371725 |
T |
|
| Q |
332 |
tgaataaataaatactgtttggaattg |
358 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32371726 |
tgaataaataaatactgtttggaattg |
32371752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 32357047 - 32357192
Alignment:
| Q |
37 |
aaaggaagtgttgtaacattgtgagattgtttaatattctcaatttattatgtcaaatagccttgagtgggtcagcttatttt-ttcctccaaaacatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||| |||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
32357047 |
aaaggaagtgttgtaacattgtgagatggttcaatattcacaatttatgatgtcaaataaccttgagtgg-tcaggttatttttttcctccaaaacatgt |
32357145 |
T |
|
| Q |
136 |
ctagagactaagattgtgattatcaatcactagaagctggataatat |
182 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
32357146 |
ctagaaactaagattgtgactatctatcactagaagctggataatat |
32357192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32371439 - 32371536
Alignment:
| Q |
1 |
cagaaggcaacaaccttagtattatagtgaggctc------gaaaggaagtgttgtaacattgtgagattgtttaatattctcaatttattatgtcaa |
92 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32371439 |
cagaaggcaacaaccttagtattatactgaggctctccctcgaaaggaagtgttgtaacattgtgagattgtttaatattcacaatttattatgtcaa |
32371536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 216 - 347
Target Start/End: Complemental strand, 32365224 - 32365102
Alignment:
| Q |
216 |
ttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttg |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
32365224 |
ttgtgaggcactctttacacaaattgactggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttg |
32365130 |
T |
|
| Q |
316 |
gaattgctgcaattcatgaataaataaatact |
347 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |
|
|
| T |
32365129 |
gaat---tgcaattcatgaat-aataaatact |
32365102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 347
Target Start/End: Original strand, 32357335 - 32357468
Alignment:
| Q |
211 |
ctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttca |
310 |
Q |
| |
|
||||||||||| ||| ||||||||| || ||||||||||||||||||| | | || ||||||||||||| |||| |||| |||||| |||| |||||| |
|
|
| T |
32357335 |
ctagtttgtgaagtattctttacaccaactgactggccttttatgcattagagaagtttaggttttatgccttcaccggcagaactcttccttcttttca |
32357434 |
T |
|
| Q |
311 |
ccttggaattgctgcaattcatgaataaataaatact |
347 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||| |
|
|
| T |
32357435 |
tcccagaat---tgcaattcatgaataaagaaatact |
32357468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 32364939 - 32364860
Alignment:
| Q |
92 |
aatagccttgagtgggtcagcttattttttcctccaaaacatgtctagagactaagattgtgattatcaatcactagaagct |
173 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| | | |||| ||||||||||||| |
|
|
| T |
32364939 |
aataaccttgagtgggtcaggttattttttcctccaaaac--gtctagaaattaagattctaactatctatcactagaagct |
32364860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University