View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_low_16 (Length: 364)
Name: NF19921_low_16
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 20329003 - 20328667
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20329003 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
20328904 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20328903 |
agaaaacatggaaatctgcctgttaatgcattcttttcaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
20328804 |
T |
|
| Q |
212 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20328803 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
20328704 |
T |
|
| Q |
312 |
tagactgctactcagtgcttcaaaacacttgggaatt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20328703 |
tagactgctactcagtgcttcaaaacacttgggaatt |
20328667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 5423899 - 5424236
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5423899 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
5423998 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5423999 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggattttggtataggacctcctaaaa |
5424098 |
T |
|
| Q |
212 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5424099 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcggagcttgtttccaccgaaattcaacactct |
5424198 |
T |
|
| Q |
312 |
tagactgctactcagtgcttcaaaacacttgggaattt |
349 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5424199 |
tagattgctactcagtgcttcaaaacacttgggaattt |
5424236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 5346579 - 5346915
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5346579 |
atgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactc |
5346678 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
211 |
Q |
| |
|
| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
5346679 |
aaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaatgattttggtataggacctcctaaat |
5346778 |
T |
|
| Q |
212 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
311 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5346779 |
gattgtcatttagatccaaaaaccttagtgcacataaatttggaaacatactactaggaatatgacctcgaagcttgtttccaccgaaattcaacattct |
5346878 |
T |
|
| Q |
312 |
tagactgctactcagtgcttcaaaacacttgggaatt |
348 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5346879 |
tagactgctactcagtgtttcaaaacacttgggaatt |
5346915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 5378827 - 5378510
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5378827 |
atgaagcatcttccaatcaccagtgctatttgggcatccaatagacccatgcagcttatttgaccttaaaatcatgattctcaatgttggaattttactc |
5378728 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
211 |
Q |
| |
|
| |||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5378727 |
aaaaaatatggaaatctgccggttaatgcattctttccaaggttaataacttgtagttccttacagttgaccaaggattttggtataggacctcctaaaa |
5378628 |
T |
|
| Q |
212 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
311 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||| || |
|
|
| T |
5378627 |
gattgtcatttagatccaaaaaccttagtgcacatgaatttggaaaaatactactaggaatatgacctcgaagcttgtttccaccaaaatttaacattcg |
5378528 |
T |
|
| Q |
312 |
tagactgctactcagtgc |
329 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5378527 |
tagactgctactcagtgc |
5378510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 5354482 - 5354147
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
||||||||||||||||| |||| |||||| | |||| | ||||||||||| | ||||||||||||||||||||| | ||| | | | |||||| || |
|
|
| T |
5354482 |
atgaagcatcttccaatcaccaaagctattagagcatttaatagacccatggaacttatttgaccttaaaaccattactcttagggaggaaattttgctc |
5354383 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
211 |
Q |
| |
|
| ||||||||||||| | || ||||||| ||||||||||||||| | ||||| |||||| || ||||||| ||| ||| |||||| | || |||||| |
|
|
| T |
5354382 |
aaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattttggtacactactgtctaaaa |
5354283 |
T |
|
| Q |
212 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
311 |
Q |
| |
|
||||||||||||||| | || ||||||||| ||| | || |||||||| || ||||||| |||||||| |||||||||||||| |||||||||| ||| |
|
|
| T |
5354282 |
gattgtcatttagattcaaaagccttagtgcacatgagttctgaaacatagtagtaggaatatgacctcggagcttgtttccaccaaaattcaaca-tct |
5354184 |
T |
|
| Q |
312 |
t-agactgctactcagtgcttcaaaacacttgggaat |
347 |
Q |
| |
|
| ||||| |||||||||||| | |||||||||||||| |
|
|
| T |
5354183 |
tgagactactactcagtgctgcgaaacacttgggaat |
5354147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 5363329 - 5362993
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| |||| || | ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5363329 |
atgaagcatcttccaatcaccagtgctatttgggcatccaataaacccgtggaatttatttgaccttaaaaccatgattctcaaggttggaattttactc |
5363230 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaaa |
211 |
Q |
| |
|
| |||||||||| ||| || |||| |||||| ||||| | ||| ||||||||||||| |||||| | | |||| ||||||||| || ||||| |
|
|
| T |
5363229 |
aagaaacatggaattcttccagttagtgcattatttccgatgttatcgacttgtagttcccgacaatttactatggattttggtatagtgccgtctaaat |
5363130 |
T |
|
| Q |
212 |
gattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactct |
311 |
Q |
| |
|
|||||||||||||||| | || ||| ||||| ||| ||||| |||||||| | ||||||| |||||| | || || ||||||| |||||||||| | |
|
|
| T |
5363129 |
gattgtcatttagatcgaaaatcctcagtgcacatgaatttagaaacatagttttaggaatatgaccttggagtttatttccacgaaaattcaacatccg |
5363030 |
T |
|
| Q |
312 |
tagactgctactcagtgcttcaaaacacttgggaatt |
348 |
Q |
| |
|
|||| | |||| |||||| ||||||||||||||||| |
|
|
| T |
5363029 |
aagacggttacttagtgctgcaaaacacttgggaatt |
5362993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 102 - 283
Target Start/End: Complemental strand, 5401395 - 5401214
Alignment:
| Q |
102 |
aattttacttagaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtatagga |
201 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||||||||||| ||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5401395 |
aattttgctcagaaaacatggaaatctgcccgttaatgcattcattccagggttaaagacttgaagttccttacaattgaccaaggattttggtatagga |
5401296 |
T |
|
| Q |
202 |
cctcctaaaagattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaa |
283 |
Q |
| |
|
||| || ||||||||||||||||||| | || ||||||||| ||| ||||| ||||||||| | | ||||| |||||||||| |
|
|
| T |
5401295 |
ccttctgaaagattgtcatttagatccaaaatccttagtgcacatgaattttgaaacataccatttggaatatgacctcgaa |
5401214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 5412594 - 5412409
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttgg-aattttact |
110 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||| | | ||||| ||| || || |
|
|
| T |
5412594 |
atgaagcatctcccaatcaccagtgctatttgggcatccaatagatccatgcatcttatttgaccttaaaatcatgattcgc-aggttggaaatattgct |
5412496 |
T |
|
| Q |
111 |
tagaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtat |
197 |
Q |
| |
|
|| ||||||||||||||| | |||| ||| |||||||||||||||||||| |||| || ||||||| ||| ||| ||||||| |
|
|
| T |
5412495 |
taagaaacatggaaatctgtcacttaaaaaattatttccaaggtttaagacttgaagtttattgcaattgaccaaagattttggtat |
5412409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 5393145 - 5392988
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaattttactt |
111 |
Q |
| |
|
||||||||||||||| | |||||| ||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || | ||| || ||| |
|
|
| T |
5393145 |
atgaagcatcttccagtcaccagttctagttgggcatccaatagacccatggagcttatttgaccttaaaaccatgattctcagggtggaaatattgctt |
5393046 |
T |
|
| Q |
112 |
agaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagtt |
169 |
Q |
| |
|
| ||||||||||||||| | |||| ||| ||||||||||||| |||||| |||| |
|
|
| T |
5393045 |
aagaaacatggaaatctgtcacttaaaaaattatttccaaggtttaggacttgcagtt |
5392988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 5502348 - 5502012
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaatt-ttact |
110 |
Q |
| |
|
||||||||| | ||||| ||| ||| ||| |||||| | ||||| || || |||||||| ||||| ||||||||||| || |||| ||||| | || || |
|
|
| T |
5502348 |
atgaagcatatcccaatcacccgtgttatgtgggcacccaatagaaccgtggagcttattagacctcaaaaccatgatcct-aatggtggaaatgtttct |
5502250 |
T |
|
| Q |
111 |
tagaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggatgttggtataggacctcctaaa |
210 |
Q |
| |
|
| ||||||||||||||| | ||| ||||| || |||||||||| ||||||||||| ||| ||||||| ||| ||| |||||||| ||| | || |
|
|
| T |
5502249 |
caagaaacatggaaatctgtcaactaaagcattgttcccaaggtttaggacttgtagtttcttgcaattgaccaaagattttggtatactaccatccaag |
5502150 |
T |
|
| Q |
211 |
agattgtcatttagatcaacaaaccttagtgcgcataaatttggaaacatactactaggaatttgacctcgaagcttgtttccaccgaaattcaacactc |
310 |
Q |
| |
|
||||||||||||||||| | | | |||||||| ||| ||||||| | || || ||| || || |||||||||||||||||||| | |||||||| | |
|
|
| T |
5502149 |
agattgtcatttagatccaaatatcttagtgcacatgaatttggggatattgtatcagggatatgccctcgaagcttgtttccaccaagattcaacatcc |
5502050 |
T |
|
| Q |
311 |
ttagactgctactcagtgcttcaaaacacttgggaatt |
348 |
Q |
| |
|
| ||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
5502049 |
tgagactactactcaatgttgcaaaacacttgggaatt |
5502012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 5468190 - 5468272
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctca |
94 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5468190 |
atgaagcatctcccaatcaccagtgctatttggacattcaatagacccatggagcttatttgaccttaaaatcatgattctca |
5468272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 5401217 - 5401165
Alignment:
| Q |
296 |
cgaaattcaacactcttagactgctactcagtgcttcaaaacacttgggaatt |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
5401217 |
cgaaattcaacattcttagactgctactcagtgctgcaaaacacttgagaatt |
5401165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 5356602 - 5356534
Alignment:
| Q |
12 |
atgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaa |
80 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||| | ||||| ||||| || ||||| |||||||| |
|
|
| T |
5356602 |
atgaagcatctcccaatcaccagtgttatttgggcacccaatagaaccatggagtttattagaccttaa |
5356534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University