View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_17 (Length: 363)
Name: NF19921_low_17
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 37187243 - 37186914
Alignment:
| Q |
19 |
agaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggttcataattca |
118 |
Q |
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| T |
37187243 |
agaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggttcataattca |
37187144 |
T |
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| Q |
119 |
gtcatggcttccttattttacacatacgtccgatcatatattaccatcttaccatatcatactattacttatcaaaaattgtttacaatgtgtgataaga |
218 |
Q |
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| T |
37187143 |
gtcatggcttccttattttacacatgcgtccgatcatatattaccatcttaccaaatcatactattacttatcgaaaattgtttacaatgtgtgataaga |
37187044 |
T |
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| Q |
219 |
tcgtaaaatatgattgaagaactatataaaacatgtttgttctatgtgaatggatagtttttaaactgtttttctattgtattcattatattcttgtgca |
318 |
Q |
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| T |
37187043 |
tcgtaaaatatgattgaagaactatataaaacatgtttgttctatgtgaatggatagtttttaaactgtttttctattgtattcattatattcttgtgca |
37186944 |
T |
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| Q |
319 |
cactttataaactattggccatgatctctg |
348 |
Q |
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| T |
37186943 |
cactttataaactattggccatgatctctg |
37186914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 17123938 - 17124035
Alignment:
| Q |
19 |
agaaggtacctaatggttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggttcataatt |
116 |
Q |
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| T |
17123938 |
agaaagtaccttatggtcgtaggtattaatactgcctttagcagcaggaaaagaagggactcggttcgagctacctggttgccacaaggttcataatt |
17124035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 3724173 - 3724099
Alignment:
| Q |
34 |
gttataggaatcaacactgcttttagcagcagaaaaagaagagactccgttcgcgccacttggatgccacaaggt |
108 |
Q |
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|||||||| ||||| || |||||||| ||||| ||| ||||||| || ||||| | |||||||||||||||||| |
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| T |
3724173 |
gttatagggatcaatacagcttttagtagcaggaaacgaagagattctgttcgaggaacttggatgccacaaggt |
3724099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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