View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_2 (Length: 552)
Name: NF19921_low_2
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 8388908 - 8388544
Alignment:
| Q |
12 |
agatgaaatagcgtcataataatattatgaagatcactggaaagacaaaatccaacacaagaaaagtaactaaagtaaatacgactaggacagaaggaat |
111 |
Q |
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| T |
8388908 |
agatgaaatagcgtcataataatattttgaagatcactggaaagacaaaatccaacacaagaaaagtaactaaagtaaatacgactaggacagaaggaat |
8388809 |
T |
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| Q |
112 |
cagaatatcattaggactcacttgacaagaataatagaaagacatataacaacctaaaacggcgtgtacttccccagattggtatcagttatgtgggaaa |
211 |
Q |
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| T |
8388808 |
cagaatatcattaggactcacttgacaagaataatagaaagacatataacaacctaaaatggcgtgtacttccccagattggtatcagttatgtgggaaa |
8388709 |
T |
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| Q |
212 |
ttgaagcaccagaactagtaatgtgtctcaaaagggtttagtgctctactagtgtaatagatagatcatagatggatggatgagcataatcaatacagca |
311 |
Q |
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| T |
8388708 |
ttgaagcaccagaactagtaatgtgtctcaaaagggtttagtgctctactagtgtaatagatagatcatagatggatggatgagcataatcaatacagca |
8388609 |
T |
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| Q |
312 |
tccacttataaaatgttcataaatatatacaattaaatctgatttatgctatgggttatatatgc |
376 |
Q |
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| T |
8388608 |
tccacttataaaatgttcataaatatatacaattaaatctgatttatgctatgggttatatatgc |
8388544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 8388488 - 8388405
Alignment:
| Q |
432 |
catggtaatagtttcttcaaggcttccaaattatcactttaaccaccatttgggcatcagcatcccgcaaacaatcctgtttta |
515 |
Q |
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| T |
8388488 |
catggtaatagtttcttcaaggctcccaaattatcactttaaccaccatttgggcatcagcatcccgcaaacaatcctgtttta |
8388405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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