View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_21 (Length: 315)
Name: NF19921_low_21
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_21 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 103 - 312
Target Start/End: Complemental strand, 170411 - 170202
Alignment:
| Q |
103 |
caataaaggttctgttttggtctcttatatatgttttcaataggcctctttttcttctcatgttagtttcgttgaaggagaatgaatcggatagctatgt |
202 |
Q |
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| T |
170411 |
caataaaagtttcgttttggtctcttatatatgttttcaatatgcctccttttcttctcatgttagtatcgttgaagcagaatgaatcggatagctatgt |
170312 |
T |
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| Q |
203 |
gatagcttgcgattgcagttagtttgttagcaattagagtgtatgctagtttctctgcaacccttgcagttctattatatggatccagtttcatccttgt |
302 |
Q |
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| T |
170311 |
gataacttgcgattgcagttagtttgttagcaattagagtgtatgctagtttctctgcaaccctttcagttctattatatggatccagtttcatccttct |
170212 |
T |
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| Q |
303 |
ctgccaccat |
312 |
Q |
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|||||||||| |
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| T |
170211 |
ctgccaccat |
170202 |
T |
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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 31052908 - 31053047
Alignment:
| Q |
173 |
gttgaaggagaatgaatcggatagctatgtgatagcttgcgattgcagttagtttgttagcaattagagtgtatgctagtttctctgcaacccttgcagt |
272 |
Q |
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| T |
31052908 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagtttgttagcaattagagtgtatgctagtttctctgcaaccctttcagt |
31053007 |
T |
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| Q |
273 |
tctattatatggatccagtttcatccttgtctgccaccat |
312 |
Q |
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| T |
31053008 |
tctattatatggatccagtttcatccttctctgccaccat |
31053047 |
T |
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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 5345569 - 5345470
Alignment:
| Q |
138 |
ttcaataggcctctttttcttctcatgttagtttcgttgaaggagaatgaatcggatagctatgtgatagcttgcgattgcagttagtttgttagcaatt |
237 |
Q |
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| T |
5345569 |
ttcactaggcctctttctcttctcatgttagtatcgttgaagaagaacgaatatgatagctataagatagcttactattgcagttagttcgttagcaatt |
5345470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 5422821 - 5422726
Alignment:
| Q |
138 |
ttcaataggcctctttttcttctcatgttagtttcgttgaaggagaatgaatcggatagctatgtgatagcttgcgattgcagttagtttgttagc |
233 |
Q |
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| T |
5422821 |
ttcactaggactctttttcttctcatgttagtattgttgaagcagaaggaatctgatagctatctgatagcttaaaattgcagttagtttgttagc |
5422726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 5363960 - 5364041
Alignment:
| Q |
156 |
cttctcatgttagtttcgttgaaggagaatgaatcggatagctatgtgatagcttgcgattgcagttagtttgttagcaatt |
237 |
Q |
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| T |
5363960 |
cttctcatgttagtattgttgaagaagaacgaatctgatagctatgtgatagcttaatgttgcagttagttctttagcaatt |
5364041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 20334691 - 20334762
Alignment:
| Q |
138 |
ttcaataggcctctttttcttctcatgttagtttcgttgaaggagaatgaatcggatagctatgtgatagct |
209 |
Q |
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| T |
20334691 |
ttcactaggactctttttcttctcatgttagtattgttgaagcagaacgaatctgatagctatctgatagct |
20334762 |
T |
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