View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_22 (Length: 285)
Name: NF19921_low_22
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 23858863 - 23859139
Alignment:
| Q |
11 |
cacagaccatgggattttgtttcatatatgccaaccagaactcaaaagaacatttcaaaaatttatagactaatattagagagaaattatcaaaacaata |
110 |
Q |
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| T |
23858863 |
cacagaccatgggattttgtttcatatatgccaaccagaactcaaaagaacatttcaaaaatttatagactaatattagagagaaattatcaaaacaata |
23858962 |
T |
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| Q |
111 |
caaaagaactatttagaatttcataccaatcaataggtaaacacaataaatactagcatcaac--nnnnnnnnngtgacaaaaatagtagcatcaactta |
208 |
Q |
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| T |
23858963 |
caaaagaactatttagaatttcataccaatcaataggtaaacacaataaatactagcatcaactttttttttttgtgacaaaaatagtagcatcaactta |
23859062 |
T |
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| Q |
209 |
cacagtagctttatatcaatcttacaacaatatgactataatatatcaagagccccaacatggtacacaagtaagct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23859063 |
cacagtagctttatatcaatcttacaacaatatgactataatatatcaagagtcccaacatggtacacaagtaagct |
23859139 |
T |
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