View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_24 (Length: 280)
Name: NF19921_low_24
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_24 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: scaffold0495 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 12369 - 12633
Alignment:
| Q |
1 |
ttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttcactttgcttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12369 |
ttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttcactttgcttgg |
12468 |
T |
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| Q |
101 |
atggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctacgtaaaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12469 |
atggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctacgtaaaaactt |
12568 |
T |
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| Q |
201 |
tgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaactaccatgcaaatt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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| T |
12569 |
tgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaattgccattcaaatt |
12633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 10235641 - 10235905
Alignment:
| Q |
1 |
ttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttcactttgcttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10235641 |
ttaaaaccttagatagaagtacaacccttattcaaatccgggtaattagacaacaaaactttgtcgacattagatagttagacagcttcactttgcttgg |
10235740 |
T |
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| Q |
101 |
atggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctacgtaaaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10235741 |
atggataactaacctaatctaacactttcctcatgtggctgttcctagtacgaaccaaagtcccatgaaacataaaaacaactttcctacgtaaaaactt |
10235840 |
T |
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| Q |
201 |
tgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaactaccatgcaaatt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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| T |
10235841 |
tgtaatacaaatcaaatgttaatcctccgtcccttcaacttctactctcaattgccattcaaatt |
10235905 |
T |
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