View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_low_3 (Length: 503)
Name: NF19921_low_3
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 8029288 - 8028802
Alignment:
| Q |
1 |
agccattgaaggctgtaagaggaatgaatgaaatgcattgtttttgttggaaaaattctgccataaaaagaaccaggagccccatagaaaaagattggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8029288 |
agccattgaaggctgtaagaggaatgaatgaaatgcattgtttttgttggaaaaatcctgccataaaaagaaccaggagccccatagaaaaagattggac |
8029189 |
T |
|
| Q |
101 |
caccaatcccatcttccacttcatcatttagtttctctgtgaacctatcaagtaacctaaaaatattgttgaaatcattcccttgaagatcattcatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8029188 |
caccaatcccatcttccacttcatcatttagtttctctgtgaacctatcaagtaacctaaaaatgttgttgaaatcattcccttgaagatcattcatgaa |
8029089 |
T |
|
| Q |
201 |
gacttggtattctggagactcgtgattatgttcttggcaaagtttctttactaatttgataacttcagatatcacaaacaaagtgtttggcccagaagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8029088 |
gacttggtattctggagactcgtgattatgttcttggcaaagtttatcaactaatttgataacttcagatatcaccaacaaagtgtttggcccagaagaa |
8028989 |
T |
|
| Q |
301 |
caacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcatctctcatttcttttgtcaaagaaataacctttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8028988 |
caacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcatctctcatttcttttgtcaaagaaataacctttt |
8028889 |
T |
|
| Q |
401 |
tctgtaccatataaaattttcgtcgtaagacaaatatagtaaaatacagtgttataacttatatatatgttgtctaaattttgtaat |
487 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8028888 |
tctgtaccatataaaattttcgtcgtaaaacaaatatagtaaaatacagtgttataacttatatatatgttgtctaaattttgtaat |
8028802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 7298122 - 7298245
Alignment:
| Q |
268 |
gatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcat |
367 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| ||||||||||| | || ||||| | |||||| |||||||| | |||||||||||| |
|
|
| T |
7298122 |
gataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcat |
7298221 |
T |
|
| Q |
368 |
ctctcatttcttttgtcaaagaaa |
391 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
7298222 |
ctcttattggctttgtcaaagaaa |
7298245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 32709889 - 32709950
Alignment:
| Q |
256 |
ttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
317 |
Q |
| |
|
||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
32709889 |
ttgataaattctgataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaat |
32709950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 32704200 - 32704240
Alignment:
| Q |
277 |
aacaaagtgtttggcccagaagaacaacccaaatctgcaat |
317 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
32704200 |
aacaaagtgtttggtccataagagcaacccaaatctgcaat |
32704240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 27736914 - 27736976
Alignment:
| Q |
255 |
tttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
317 |
Q |
| |
|
|||||||| ||| |||||||| |||| ||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
27736914 |
tttgataatttctgatatcaccaacatagtgtttggcccaaaagagcaacccaagtctgcaat |
27736976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 27736710 - 27736751
Alignment:
| Q |
48 |
tggaaaaattctgccataaaaagaaccaggagccccatagaa |
89 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
27736710 |
tggaaaaattctgccataaaatgaaccaggaactccatagaa |
27736751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 5811596 - 5811657
Alignment:
| Q |
256 |
ttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
317 |
Q |
| |
|
||||||| |||||| ||||| || ||||||||||| ||| |||| |||||||| |||||||| |
|
|
| T |
5811596 |
ttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaat |
5811657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University