View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_low_31 (Length: 250)
Name: NF19921_low_31
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5423892 - 5423654
Alignment:
| Q |
1 |
gatctagcacgcaataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5423892 |
gatctagcacgcaataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcg |
5423793 |
T |
|
| Q |
101 |
gcagtttgttttttgaagtttatgataactatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtggcccaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5423792 |
gcagtttgttttttgaagtttatgataactatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtggcccaact |
5423693 |
T |
|
| Q |
201 |
tcttttaaatatgtcccattctgatctgtatcaagtatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5423692 |
tcttttaaatatgtcccattctgatctgtatcaagtatt |
5423654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5378834 - 5379057
Alignment:
| Q |
1 |
gatctagcacgcaataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcg |
100 |
Q |
| |
|
||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5378834 |
gatctggcatgcaataacttcagcggcacgatatcatctgcactcttaaatagttggaaagcaatgatgcgtgacgaagacgtgcttgggccagaattcg |
5378933 |
T |
|
| Q |
101 |
gcagtttgttttttgaagtttatgataactatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtggcccaact |
200 |
Q |
| |
|
||| |||||||||||||||| || ||||| | ||||||||| ||||||| | |||| || ||| | |||| || ||||| | |||||| ||||| |
|
|
| T |
5378934 |
gcaatttgttttttgaagttcttg---actattatacaatgggtttgaaggatgcattacgaattatgaacaaatattatgctacgaaagtggttcaact |
5379030 |
T |
|
| Q |
201 |
tcttttaaatatgtcccattctgatct |
227 |
Q |
| |
|
| |||||| ||| ||||||||||||| |
|
|
| T |
5379031 |
tactttaaaaatgccccattctgatct |
5379057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5346572 - 5346349
Alignment:
| Q |
1 |
gatctagcacgcaataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcg |
100 |
Q |
| |
|
|||||||| ||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5346572 |
gatctagcctgcaataaattcaccggcacaatatcatctgcactcttaaatagttggaaagcaatgatgcgtgacgaagacgtgcttggtccagaattcg |
5346473 |
T |
|
| Q |
101 |
gcagtttgttttttgaagtttatgataactatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtggcccaact |
200 |
Q |
| |
|
||| ||||||||||||||| || | ||||||| | ||||||||| ||||| | | || | || ||| |||| || ||||| | |||||| ||||| |
|
|
| T |
5346472 |
gcaatttgttttttgaagt---tgttgactatcatccaatgggtttgaaggacgcaataggaattatgatcaaatattatgctatgaaagtggttcaact |
5346376 |
T |
|
| Q |
201 |
tcttttaaatatgtcccattctgatct |
227 |
Q |
| |
|
| |||||||||||||| ||||||||| |
|
|
| T |
5346375 |
tactttaaatatgtcccgttctgatct |
5346349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 5401406 - 5401603
Alignment:
| Q |
30 |
gatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcggcagtttgttttttgaagtttatgataac |
129 |
Q |
| |
|
|||||||||||||||| | ||||| ||| |||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||| |||| ||||||| |
|
|
| T |
5401406 |
gatatcatctgcactcctcaatagctggaaagcaatgatgcgtgatgaagacgtgcttgggccagaattcggaaatttgttttttgatgtttttgataac |
5401505 |
T |
|
| Q |
130 |
tatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtggcccaacttcttttaaatatgtcccattctgatct |
227 |
Q |
| |
|
||||| | || |||||| |||||| | |||| || ||| | ||| || ||||| | |||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
5401506 |
tatcatccaacgggtttgcaggatgcattacgaattatgaacaaacattatgctaggaaagtggttcaaattgttttaaatatgtcccattctgatct |
5401603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 5363347 - 5363436
Alignment:
| Q |
12 |
caataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcgg |
101 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||| |||||| |||||||||||||||| ||||| ||| |||| ||||||||||| |
|
|
| T |
5363347 |
caataactttagtggcatgatatcagcatcactcttaaacagttggaaagcaatgatgcgtgatgaagatgtgtttgggccagaattcgg |
5363436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 5354520 - 5354604
Alignment:
| Q |
32 |
tatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcggcagtttgttttttga |
116 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| || || |||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
5354520 |
tatcacctgcactcttaaatagttggaaagcaatgatgcgcgatgaggacgagcttgggccagaattcggccatttgttttttga |
5354604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 5393197 - 5393281
Alignment:
| Q |
46 |
ttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcggcagtttgttttttgaagtttatgataact |
130 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||| || ||||| ||||||| ||| |||||||||||| || ||||||||| |
|
|
| T |
5393197 |
ttaaatagttggaaggcaatgatgcgtgatgaagatgttcttgggacagaattaggccatttgttttttgacattgatgataact |
5393281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20329010 - 20329248
Alignment:
| Q |
1 |
gatctagcacgcaataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20329010 |
gatctagcatgcaataacttcagtggcatgatatcatctgcactcttaaatagttggcaagcaatgatgcgtgacgaagacgtgcttggaccagaattcg |
20329109 |
T |
|
| Q |
101 |
gcagtttgttttttgaagtttatgataactatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtggcccaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20329110 |
gcagtttgttttttgaagtttatgataactatcaccaaatgggttttaaggatgtagtacggatgatggaaaaattttgtgctaagcaagtgacccaact |
20329209 |
T |
|
| Q |
201 |
tcttttaaatatgtcccattctgatctgtatcaagtatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20329210 |
tcttttaaatatgtcccattctgatctgtatcaagtatt |
20329248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University