View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19921_low_32 (Length: 241)

Name: NF19921_low_32
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19921_low_32
NF19921_low_32
[»] scaffold0043 (6 HSPs)
scaffold0043 (1-226)||(29166-29391)
scaffold0043 (1-226)||(44024-44249)
scaffold0043 (2-221)||(45859-46078)
scaffold0043 (2-192)||(31001-31191)
scaffold0043 (125-219)||(50850-50944)
scaffold0043 (40-93)||(50934-50987)
[»] chr2 (1 HSPs)
chr2 (1-221)||(22395479-22395699)
[»] scaffold1163 (1 HSPs)
scaffold1163 (1-221)||(883-1103)
[»] chr3 (13 HSPs)
chr3 (1-221)||(27387936-27388156)
chr3 (1-221)||(28006447-28006667)
chr3 (125-222)||(26631340-26631437)
chr3 (125-221)||(28085654-28085750)
chr3 (42-221)||(19482366-19482545)
chr3 (40-221)||(27380546-27380727)
chr3 (1-221)||(26632060-26632271)
chr3 (125-219)||(27350744-27350838)
chr3 (40-213)||(19477957-19478130)
chr3 (113-219)||(27981032-27981140)
chr3 (28-93)||(27350689-27350754)
chr3 (1-70)||(28085572-28085641)
chr3 (1-93)||(26631258-26631350)
[»] chr5 (1 HSPs)
chr5 (113-219)||(6164269-6164375)


Alignment Details
Target: scaffold0043 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29166 - 29391
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29166 gcttttgagtgcaaagagtaggcaattccacattgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 29265  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29266 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 29365  T
Q  201 gggcacaacaaagtaaagaatattct 226  Q
    ||||||||||||||||||||| ||||    
T  29366 gggcacaacaaagtaaagaattttct 29391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 44024 - 44249
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44024 gcttttgagtgcaaagagtaggcaattccacattgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 44123  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44124 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 44223  T
Q  201 gggcacaacaaagtaaagaatattct 226  Q
    ||||||||||||||||||||| ||||    
T  44224 gggcacaacaaagtaaagaattttct 44249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 45859 - 46078
Alignment:
Q  2 cttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaagaa 101  Q
    |||||||||||||||||||  |||  ||| |||| || ||||||||||| ||  ||||||||||||||| |   ||||||||||||||||||||| ||||    
T  45859 cttttgagtgcaaagagtacacaaacccatgttgacaatgaaacttcaactgttaatgctcagatacatgagatctctttggaaattgatgaacttagaa 45958  T
Q  102 aacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtg 201  Q
    ||  ||||| ||| |||||| |||||| | ||||||| |   | ||| ||||| |||||||||  || ||| |  ||||||| ||||||||   | ||||    
T  45959 aatggttggcagaccttgagcatcaaagaaatgatttaatttctgtaatgaaccaatgtgatgatcaaaagaagaagttgaaggctgaatgttctaagtg 46058  T
Q  202 ggcacaacaaagtaaagaat 221  Q
    ||| ||||||||||||||||    
T  46059 ggcccaacaaagtaaagaat 46078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 31001 - 31191
Alignment:
Q  2 cttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaagaa 101  Q
    |||||||||||||||||||  |||  ||| |||| || ||||||||||| ||  ||||||||||||||| |   ||||||||||||||||||||| ||||    
T  31001 cttttgagtgcaaagagtacacaaacccatgttgacaatgaaacttcaactgttaatgctcagatacatgagatctctttggaaattgatgaacttagaa 31100  T
Q  102 aacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatg 192  Q
    || |||||| ||| |||||| |||||| | ||||||| |   | ||| ||||| |||||||||  |||||| |  ||||||| ||||||||    
T  31101 aaaagttggcagaccttgagcatcaaagaaatgatttaatttctgtaatgaaccaatgtgatgatcagaagaagaagttgaaggctgaatg 31191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 50944 - 50850
Alignment:
Q  125 caaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaagtaaaga 219  Q
    ||||| |||||||||||| ||||||||||||||||| |||| |||||| |  ||||||| |||||||||| ||| |||||||||||||| |||||    
T  50944 caaattgatgatttgaagtcagtagtgaacaaatgttatgttcagaagcagaagttgaaggctgaatgcactgaatgggcacaacaaagcaaaga 50850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 50987 - 50934
Alignment:
Q  40 tgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatga 93  Q
    |||| |||||| ||||||||||||||||||| ||| ||||||  ||||||||||    
T  50987 tgaatcttcaactgccaatgctcagatacatgaactctctttacaaattgatga 50934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22395479 - 22395699
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22395479 gcttttgattgcaaagagtaagcaattccacattgtcagtgaaacttcaactgccaatgctcagatacataaacgctctttggaaattgatgaacttaga 22395578  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  22395579 aaacagttggaagatcttgagaatcaaatagatgatttgaagtcagtagtgaacaaatgtgatgttcagaaggaagagttgaacactgaatgcagtgagt 22395678  T
Q  201 gggcacaacaaagtaaagaat 221  Q
    |||||||||||||||||||||    
T  22395679 gggcacaacaaagtaaagaat 22395699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 883 - 1103
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    |||||||| ||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  883 gcttttgattgcaaagagtaagcaattccacattgtcagtgaagcttcaactgccaatgctcagatacataaacgctctttggaaattgatgaacttaga 982  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  983 aaacagttggaagatcttgagaatcaaatagatgatttgaagtcagtagtaaacaaatgtgatgttcagaaggaagagttgaacgctgaatgcagtgagt 1082  T
Q  201 gggcacaacaaagtaaagaat 221  Q
    |||||||||||||||||||||    
T  1083 gggcacaacaaagtaaagaat 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27388156 - 27387936
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  27388156 gcttttgagtgcaaagagtaagcaattccacattgtcagtgaaacttcaactgccaatgctcagatacataaacgctctttggaaactgatgaacttaga 27388057  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  27388056 aaacagttagaagatcttgagaatcaaatagatgatttgaagtcagtagtgaacagatgtaatgttcagaaggaagagttgaacgctgaatgcagtgagt 27387957  T
Q  201 gggcacaacaaagtaaagaat 221  Q
    |||||||| ||||||||||||    
T  27387956 gggcacaaaaaagtaaagaat 27387936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28006447 - 28006667
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    ||||| ||||||||||||||  |||  | || ||| ||||||| |||||| ||||||  ||||||||||| | | ||||||  ||||||||||||| |||    
T  28006447 gctttggagtgcaaagagtacacaaaacgacattgacagtgaatcttcaactgccaaatctcagatacatgagctctctttacaaattgatgaacttaga 28006546  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
    ||| ||||||||||||||||||| | || ||||||||||||| ||| |||||||| ||| ||||| ||||||    ||||||| |||||||||   ||||    
T  28006547 aaaaagttggaagatcttgagaaacgaagagatgatttgaagtcagaagtgaacacatgcgatgttcagaagagcaagttgaaggctgaatgcgcggagt 28006646  T
Q  201 gggcacaacaaagtaaagaat 221  Q
    |||||||||||||||||||||    
T  28006647 gggcacaacaaagtaaagaat 28006667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 26631340 - 26631437
Alignment:
Q  125 caaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaagtaaagaata 222  Q
    ||||| |||||||||||| ||||  |||||||||||||||| ||||||||  ||||||| |||||||| | |||||||||||||||||||||||||||    
T  26631340 caaattgatgatttgaagtcagtcctgaacaaatgtgatgttcagaaggataagttgaaggctgaatgtactgagtgggcacaacaaagtaaagaata 26631437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 28085654 - 28085750
Alignment:
Q  125 caaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaagtaaagaat 221  Q
    ||||||||  |||||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||| ||| |||||||| |||||||||||||    
T  28085654 caaatagacaatttgaagtcagtactgaacaaatgtgatgttcagaaggaaaagttgaaggctgaatgcactgaatgggcacagcaaagtaaagaat 28085750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 19482545 - 19482366
Alignment:
Q  42 aaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaagaaaacagttggaagatcttgagaatcaaatagatgatttgaa 141  Q
    ||||||||| |||||| ||| | |||||  | | ||||||| ||||||||||||| || ||| |||||| ||| ||||||||||||| ||||||||||||    
T  19482545 aaacttcaactgccaaagctaaaatacaggagctctctttgcaaattgatgaacttaggaaaaagttggcagaccttgagaatcaaagagatgatttgaa 19482446  T
Q  142 ggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaagtaaagaat 221  Q
      ||||| ||||| |||||||||| |||| | |  ||||||| ||||||||   | ||||||| ||||||||| ||||||    
T  19482445 ttcagtattgaaccaatgtgatgttcagatgaagaagttgaaggctgaatgttctaagtgggcccaacaaagtgaagaat 19482366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 27380546 - 27380727
Alignment:
Q  40 tgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaagaaaacagttggaagatcttgagaatcaaatagatgatttg 139  Q
    ||||| ||||| ||||||||||| |||| || | | ||||||  |||||||||| |  | |||| ||||||||||| |||||||||||| ||| ||||||    
T  27380546 tgaaatttcaactgccaatgctcggatagatgagctctcttttcaaattgatgagcatacaaaaaagttggaagatattgagaatcaaagagaagatttg 27380645  T
Q  140 aaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaagtaaagaat 221  Q
    ||| ||||| ||||||| ||  |||| ||||||    ||||||| |||||||| | ||||||||| |||||||| |||||||    
T  27380646 aagtcagtattgaacaattgcaatgttcagaagatcaagttgaaggctgaatgtactgagtgggctcaacaaagcaaagaat 27380727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26632060 - 26632271
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaaga 100  Q
    ||||| ||||||||||||||  |||  |||||||| ||  ||||||||| |||||||||||||||||||| | | ||||||  |||||||||||| |       
T  26632060 gctttggagtgcaaagagtacacaaacccacgttgacaaagaaacttcagttgccaatgctcagatacatgagctctctttacaaattgatgaacaa--- 26632156  T
Q  101 aaacagttggaagatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagt 200  Q
          | || |  |||||||||||||| ||| ||||||||| ||| | ||||| |||||||||| |||||| || || |||| ||||||||   | |||    
T  26632157 ------tcggcaagtcttgagaatcaaagagaggatttgaagtcagcattgaactaatgtgatgttcagaagaaaaagctgaaggctgaatgttctaagt 26632250  T
Q  201 gggcacaacaaagtaaagaat 221  Q
    ||||||||||||||| |||||    
T  26632251 gggcacaacaaagtagagaat 26632271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 27350744 - 27350838
Alignment:
Q  125 caaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaagtaaaga 219  Q
    ||||| |||||||||||| |||||||||||||||||||||| |||||| |  ||||||| |||||||||| ||| |||||||  ||||| |||||    
T  27350744 caaattgatgatttgaagtcagtagtgaacaaatgtgatgttcagaagcagaagttgaaggctgaatgcactgaatgggcactgcaaagcaaaga 27350838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 19477957 - 19478130
Alignment:
Q  40 tgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatgaactaagaaaacagttggaagatcttgagaatcaaatagatgatttg 139  Q
    ||||| ||||| ||||||||||| |||| || | | ||||||  ||| |||||| |  |||||| ||||||||||| || ||||||||| ||| | ||||    
T  19477957 tgaaatttcaactgccaatgctcggatagatgagctctctttacaaactgatgagcatagaaaagagttggaagatattaagaatcaaagagaagctttg 19478056  T
Q  140 aaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaag 213  Q
    |||  ||||||||||| |||  ||||  ||||| |  ||||||| |||||||| | ||||||||| ||||||||    
T  19478057 aagtgagtagtgaacagatgcaatgttgagaagaacaagttgaaggctgaatgtactgagtgggctcaacaaag 19478130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 27981032 - 27981140
Alignment:
Q  113 gatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaagg--aagagttgaacgctgaatgcagtgagtgggcacaaca 210  Q
    ||||||| ||| |||| ||||||||||||| | ||||| |||||||||| ||| |||||||  ||   ||||| | |||||||| ||| |||||||| ||    
T  27981032 gatcttgtgaaacaaagagatgatttgaagtccgtagtaaacaaatgtgttgttcagaaggtgaaatattgaaggttgaatgcattgaatgggcacagca 27981131  T
Q  211 aagtaaaga 219  Q
    |||||||||    
T  27981132 aagtaaaga 27981140  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 27350689 - 27350754
Alignment:
Q  28 ccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatga 93  Q
    |||| ||| ||||||| |||||| ||||||||||||||||||| | | ||||||  ||||||||||    
T  27350689 ccacattgacagtgaatcttcaactgccaatgctcagatacatgatctctctttacaaattgatga 27350754  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28085572 - 28085641
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacat 70  Q
    ||||||||||||||||||||  |||  |||| ||| |  |||| |||||| |||||||||||||||||||    
T  28085572 gcttttgagtgcaaagagtacacaagcccacattgacgatgaatcttcaactgccaatgctcagatacat 28085641  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26631258 - 26631350
Alignment:
Q  1 gcttttgagtgcaaagagtaggcaattccacgttgtcagtgaaacttcaattgccaatgctcagatacataaacgctctttggaaattgatga 93  Q
    ||||| ||||||||||||||  |||  |||| ||| | | ||| |||||| ||||||||||||||||||| ||  ||||||  ||||||||||    
T  26631258 gctttggagtgcaaagagtacacaaacccacattgacggggaatcttcaactgccaatgctcagatacatgaattctctttacaaattgatga 26631350  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 6164375 - 6164269
Alignment:
Q  113 gatcttgagaatcaaatagatgatttgaaggcagtagtgaacaaatgtgatgtacagaaggaagagttgaacgctgaatgcagtgagtgggcacaacaaa 212  Q
    ||||||| ||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||   |||||  ||| |||||| ||| |||||||||||||    
T  6164375 gatcttgtgaaacaaagagatgatttgaaatcagtagtgaacaaatgtgatgttcagaaggagaggttgatggctaaatgcactgaatgggcacaacaaa 6164276  T
Q  213 gtaaaga 219  Q
    |||||||    
T  6164275 gtaaaga 6164269  T

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