View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_34 (Length: 239)
Name: NF19921_low_34
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26427957 - 26427736
Alignment:
| Q |
1 |
cttcaactataattgttacccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaa |
100 |
Q |
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| T |
26427957 |
cttcaactataattgttatccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaa |
26427858 |
T |
|
| Q |
101 |
aaccaccatttttcctctaactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttacccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427857 |
aaccaccatttttcctctaactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttacccta |
26427758 |
T |
|
| Q |
201 |
acccttgtcaagatgatcaact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
26427757 |
acccttgtcaagatgatcaact |
26427736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 28008963 - 28009053
Alignment:
| Q |
1 |
cttcaactataattgttacccttatcaacctattcaaactaccaa---caactcagaaatcactacttttcaacatcatgaacaagaacaa |
88 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28008963 |
cttcaattataattgttacccttatcaacctactcaaactaccaataacaactcagaaatcaccacttttcaacatcatgaacaagaacaa |
28009053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 28009058 - 28009107
Alignment:
| Q |
120 |
actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact |
169 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28009058 |
actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact |
28009107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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