View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_4 (Length: 478)
Name: NF19921_low_4
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 43695665 - 43695221
Alignment:
| Q |
16 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
115 |
Q |
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| T |
43695665 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
43695566 |
T |
|
| Q |
116 |
taggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaaggcaaagct |
215 |
Q |
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| T |
43695565 |
taggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaaggcaaagct |
43695466 |
T |
|
| Q |
216 |
gattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattgggatgtgggagttgg |
315 |
Q |
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| T |
43695465 |
gattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaacgaaaggattcgaagaaagagatttggattctgaattgggatgtgggagttgg |
43695366 |
T |
|
| Q |
316 |
agaccatagacttatagctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgnnnnnnnatctggttaaca |
415 |
Q |
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| T |
43695365 |
agaccatagacttatagctatgtatggattcatttcaatgtcgttcatagtattatattttgaatcattatatgaaatgtgtttttttatctggttaaca |
43695266 |
T |
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| Q |
416 |
tactataccttgtttaccatggttgttttttggtttagaagttat |
460 |
Q |
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| T |
43695265 |
tactataccttgtttaccatggttgttttttggtttagaagttat |
43695221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 43709558 - 43709432
Alignment:
| Q |
16 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
115 |
Q |
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|||||||| || ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||| || || |||||||||| ||||| |
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| T |
43709558 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
43709459 |
T |
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| Q |
116 |
taggaattaaaagctatgtggagaaag |
142 |
Q |
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| T |
43709458 |
taagaatgaaaagttacgtggagaaag |
43709432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 43707834 - 43707708
Alignment:
| Q |
16 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
115 |
Q |
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||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||| ||||||| | ||||||| || | ||||||| ||| ||||| |
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| T |
43707834 |
atgaatgaccaaccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctt |
43707735 |
T |
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| Q |
116 |
taggaattaaaagctatgtggagaaag |
142 |
Q |
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| T |
43707734 |
taggaatgaaaagttttgtggagaaag |
43707708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 43696443 - 43696407
Alignment:
| Q |
28 |
gcttgtaaggatcttcaagttttatgggaggaacttg |
64 |
Q |
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| T |
43696443 |
gcttgtaaggatcttcaaattttctgggaggaacttg |
43696407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 15827243 - 15827530
Alignment:
| Q |
16 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
115 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||| || | |||||||| | ||||| |
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| T |
15827243 |
atgaatgaacaagcttgtaaggatcttcaagttttatgggaggaactagcgaaatttaaatttgatattacttggctagaatcgcatgttcactatgctt |
15827342 |
T |
|
| Q |
116 |
taggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaaggcaaagct |
215 |
Q |
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||||||| ||||| || |||||||||| | || | ||||||| ||||||| || ||| | ||||||| ||| || |||||||||| ||| |
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| T |
15827343 |
taggaataaaaagatacatggagaaagctctggaggctgaaaagatgaaggagaacatggtagttttagagcttgaaatggaaaggctaaaggttaagtc |
15827442 |
T |
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| Q |
216 |
gattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattggga |
303 |
Q |
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| T |
15827443 |
gcttgcagctgagatgaatcttgacatggaaagagacttgttgaaatccaaaggtttcaaagaattagatttagattctgaattggga |
15827530 |
T |
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