View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19921_low_5 (Length: 471)
Name: NF19921_low_5
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 6473490 - 6473936
Alignment:
| Q |
17 |
catactattcagcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcattggaaattcttgctgctaaaat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473490 |
catactattctgcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcattggaaattcttgctgctaaaat |
6473589 |
T |
|
| Q |
117 |
gtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatgatgggagttctatggtctaacaagagagacagtgga |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473590 |
gtggtggcatgtaaaagaaggagagaatctctatgaggaagattttacaaaagagaataggatgatgggagttctatggtctaacaagagagacagtgga |
6473689 |
T |
|
| Q |
217 |
ttatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctcaagttttgttttcagatgttgattatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6473690 |
ttatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttttgttttcagatgttgattatg |
6473789 |
T |
|
| Q |
317 |
tgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473790 |
tgaaggaacttgtggagtggacattgcttgctttaaatagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataa |
6473889 |
T |
|
| Q |
417 |
tgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473890 |
tgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
6473936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 78 - 463
Target Start/End: Complemental strand, 6465003 - 6464618
Alignment:
| Q |
78 |
atcgacacttacatcattggaaattcttgctgctaaaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaatagg |
177 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||| ||| | || || || | |||| | ||||| |||| | |
|
|
| T |
6465003 |
atcgacacttacatcattggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataag |
6464904 |
T |
|
| Q |
178 |
atgatgggagttctatggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattga |
277 |
Q |
| |
|
|| | || ||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
6464903 |
gtggttggtgttctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgc |
6464804 |
T |
|
| Q |
278 |
ttcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatg |
377 |
Q |
| |
|
|||| |||||| || | || |||||| ||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||||||| |
|
|
| T |
6464803 |
ttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatg |
6464704 |
T |
|
| Q |
378 |
gaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
463 |
Q |
| |
|
|||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||| ||| |||||| | |||||||||| |
|
|
| T |
6464703 |
gaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
6464618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 28 - 424
Target Start/End: Complemental strand, 6526091 - 6525695
Alignment:
| Q |
28 |
gcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcattggaaattcttgctgctaaaatgtggtggcatg |
127 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6526091 |
gcagccttgatgggaatggcatacgacgatgcagaactcgcagcgactgcatcgacacttgcatcatttgaaattcttgctgctaaaatgtggtggcatg |
6525992 |
T |
|
| Q |
128 |
taaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatgatgggagttctatggtctaacaagagagacagtggattatggtttgc |
227 |
Q |
| |
|
||||||| |||| |||| | |||||| ||| |||| ||| | |||| ||| || || || || ||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
6525991 |
taaaagaaggagggaatatgtatgagaaagtgtttagtaaaaacaataagataattggtgtactttggtcgaacaaaagagacagtggtttatggtttgg |
6525892 |
T |
|
| Q |
228 |
tccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaactt |
327 |
Q |
| |
|
||| |||| ||||||||||||||||||||| ||||||||| |||||||| |||| |||||| |||| ||||| || |||||| |||||||||| |||| |
|
|
| T |
6525891 |
tccagctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaagtcttgttctctgatgttatgtatgtgaagggactt |
6525792 |
T |
|
| Q |
328 |
gtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtg |
424 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||||||| || ||||| || ||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6525791 |
gtggagtggacattacctgctttaaaaagggatggtgttgaagagggttggaaggggtttgtttatgccttgcaagggatttatgataatgaaagtg |
6525695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 113 - 463
Target Start/End: Original strand, 6462364 - 6462714
Alignment:
| Q |
113 |
aaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatgatgggagttctatggtctaacaagagagacag |
212 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || || |||| ||||| ||||||||||| || ||||| |||||| |||||||||||||||||||||| || |
|
|
| T |
6462364 |
aaatgtggtggcatataaaagaaggagataaactatatgcagaagagtttacaaaagagaacaggatcatgggatttctatggtctaacaagagagaaag |
6462463 |
T |
|
| Q |
213 |
tggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctcaagttttgttttcagatgttgat |
312 |
Q |
| |
|
|||| | ||||||||||| ||| || | ||||||||| ||||||||||||||| |||||||| ||||||||||| |||| ||||| || |||||||| |
|
|
| T |
6462464 |
tggactttggtttgctccacctgaatatagagaatgtagacttggaattcagctcttaccattggttcctatttctgaagtattgttctctgatgttgaa |
6462563 |
T |
|
| Q |
313 |
tatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatg |
412 |
Q |
| |
|
||||||||| ||||||| || |||||||||| |||||| ||||| || ||||||||||||||||||||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
6462564 |
tatgtgaagcaacttgttgaatggacattgcctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgctttacaaggaatttatg |
6462663 |
T |
|
| Q |
413 |
ataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
463 |
Q |
| |
|
|||| |||| || |||||||||||||| || ||| || |||||||||||| |
|
|
| T |
6462664 |
ataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatg |
6462714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 113 - 463
Target Start/End: Complemental strand, 6496308 - 6495958
Alignment:
| Q |
113 |
aaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatgatgggagttctatggtctaacaagagagacag |
212 |
Q |
| |
|
|||||||||||||| ||||||| |||| || || |||| ||||| |||||||||| ||| |||| |||||| |||||||||| ||||||||||| || |
|
|
| T |
6496308 |
aaatgtggtggcatataaaagaaggaggaaaactatatgccgaagaatttacaaaagcgaatcggatcatgggatttctatggtccaacaagagagaaag |
6496209 |
T |
|
| Q |
213 |
tggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctcaagttttgttttcagatgttgat |
312 |
Q |
| |
|
|||| | ||||||||||| | | || |||||||||||| ||||| |||||||| |||||||| ||||||||||| |||| ||||| || ||||| || |
|
|
| T |
6496208 |
tggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgttctctgatgtcgaa |
6496109 |
T |
|
| Q |
313 |
tatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatg |
412 |
Q |
| |
|
||||||||| ||||||| || ||| |||||| |||||| ||||| || ||||||||||||||||||||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
6496108 |
tatgtgaagcaacttgttgaatgggcattgcctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgccttacaaggaatttatg |
6496009 |
T |
|
| Q |
413 |
ataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
463 |
Q |
| |
|
|||| |||| || |||||||||||||| || ||| || |||||||||||| |
|
|
| T |
6496008 |
ataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatg |
6495958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 82 - 460
Target Start/End: Complemental strand, 6505146 - 6504765
Alignment:
| Q |
82 |
acacttacatcattggaaattcttgctgctaaaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatga |
181 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||||||| || || | ||| | ||||| ||||| ||||||||||| ||||| || |
|
|
| T |
6505146 |
acactaacatcattggaaattcttggaaccaaaatgtggtggcatgttaagaagaatgggaaattgtatgaagaagagtttacaaaagagaatagaatag |
6505047 |
T |
|
| Q |
182 |
tgggagttctatggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcc |
281 |
Q |
| |
|
|||||||| | ||| ||| || ||||| |||||| | ||||||||||| ||| ||||| |||| |||| ||||||||||| |||||||| ||| |
|
|
| T |
6505046 |
tgggagttttgtggaataataaaagagatagtggactttggtttgctccacctgaatggagagaagctaggacaggaattcagcttataccattggctcc |
6504947 |
T |
|
| Q |
282 |
tatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaa---ggtgttgaagaaggatgg |
378 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||| || || ||||| ||||||||||||| |||||| || |||||| ||||||| |||||||||| |
|
|
| T |
6504946 |
tatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatgg |
6504847 |
T |
|
| Q |
379 |
aaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatg |
460 |
Q |
| |
|
|| || || | ||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||| | ||||||| |
|
|
| T |
6504846 |
aagggattcttatattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6504765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 363
Target Start/End: Complemental strand, 6527859 - 6527578
Alignment:
| Q |
82 |
acacttacatcattggaaattcttgctgctaaaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatga |
181 |
Q |
| |
|
|||||| |||||||||||||| ||| | ||||||||||||||||| ||| ||| | || |||||||| ||||||||||||| || |||||||| | |
|
|
| T |
6527859 |
acacttgcatcattggaaatttgtgcagagaaaatgtggtggcatgttaaaaaggacggtaagctctatgaaaaagattttacaaaggagaataggatca |
6527760 |
T |
|
| Q |
182 |
tgggagttctatggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcc |
281 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||| |||||||| |||| | |||| ||| || |
|
|
| T |
6527759 |
tgggagttttatggtctaacaagagagacagtggattgtcgtttgctccggctgaatggagagaagcaaggcttggtgttcaagttttacccttgtcgcc |
6527660 |
T |
|
| Q |
282 |
tatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggt |
363 |
Q |
| |
|
||||||| ||||||||||||| |||| | |||||||||||||| || || |||||||| | ||| ||||||||||||||| |
|
|
| T |
6527659 |
tatttctgaagttttgttttctgatgcaaagtatgtgaaggaactagttgaatggacattacctgccttaaaaagggaaggt |
6527578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 269 - 460
Target Start/End: Original strand, 6516812 - 6517003
Alignment:
| Q |
269 |
taccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttga |
368 |
Q |
| |
|
|||||||| ||| |||||| ||||||| ||||| ||||||||||||||||| |||||||| |||||| |||||| | |||| |||| | ||||| ||| |
|
|
| T |
6516812 |
taccattgtgtccaatttctgaagttttattttctgatgttgattatgtgaaagaacttgttgagtgggcattgcctcctttcaaaacgttaggtgctga |
6516911 |
T |
|
| Q |
369 |
agaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatg |
460 |
Q |
| |
|
| | |||||| || ||| ||||||||| |||||||||||||||||||||||| ||||||||| |||| ||| |||||| | ||||||| |
|
|
| T |
6516912 |
aaacagatggacgggatttcggtatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6517003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 187 - 367
Target Start/End: Original strand, 1842372 - 1842552
Alignment:
| Q |
187 |
gttctatggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctattt |
286 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| ||||||||| ||| |||| |||||||||||| |||| || ||||||||| ||||| | | ||||||| |
|
|
| T |
1842372 |
gttctgtggtctaacaaaagagaca-tggtctatggtttggtcctgctgagtggaaagaatgttggctcggcattcagctcttaccactactccctattt |
1842470 |
T |
|
| Q |
287 |
ctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattg-cttgctttaaaaagggaaggtgttg |
367 |
Q |
| |
|
|| || |||||| || |||||| | |||||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||| |
|
|
| T |
1842471 |
ctgaaattttgtcctctgatgttaagtatgtgaagggacttgtggagtggacattgcctttctttagaaagggatggtgttg |
1842552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 1832347 - 1832453
Alignment:
| Q |
187 |
gttctatggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctattt |
286 |
Q |
| |
|
||||| |||||| |||| ||||||||||| ||||||||| ||| |||| |||||||||||| |||| || ||||||||| ||||||| ||||||| | |
|
|
| T |
1832347 |
gttctttggtcttacaaaagagacagtggtctatggtttggtcctgctgagtggaaagaatgtcggctcggcattcagctcttaccatttcttcctatct |
1832446 |
T |
|
| Q |
287 |
ctcaagt |
293 |
Q |
| |
|
|| |||| |
|
|
| T |
1832447 |
cttaagt |
1832453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 1828395 - 1828448
Alignment:
| Q |
75 |
tgcatcgacacttacatcattggaaattcttgctgctaaaatgtggtggcatgt |
128 |
Q |
| |
|
|||||| |||||| | ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1828395 |
tgcatcaacacttgcgtcattggaagttcttgctgctaaaatgtggtggcatgt |
1828448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 1842277 - 1842322
Alignment:
| Q |
75 |
tgcatcgacacttacatcattggaaattcttgctgctaaaatgtgg |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1842277 |
tgcatcaacacttacatcattggaaattcttgctgcaaaaatgtgg |
1842322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 1822453 - 1822497
Alignment:
| Q |
75 |
tgcatcgacacttacatcattggaaattcttgctgctaaaatgtg |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1822453 |
tgcatcaacacttacatcattggaaattctttctgctaaaatgtg |
1822497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 416
Target Start/End: Complemental strand, 6456928 - 6456705
Alignment:
| Q |
193 |
tggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctcaag |
292 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||| || ||| ||||| ||| |||||||| || ||||| | |||| ||| | ||||| | | | |
|
|
| T |
6456928 |
tggtctaataagagagatagtggactatggtttgcgcctgctcaatggagagagtgtaggctaggtattcaagttttacctttgttgcctatcaccgagg |
6456829 |
T |
|
| Q |
293 |
ttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaaggtgttgaagaaggatggaaaggttttgtcta |
392 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| |||||||| |||||||| | | ||| || ||| ||||||||| ||||| |||||||||||| | || |
|
|
| T |
6456828 |
cattgttttcggatgttggttatgtaaaggagcttgtggaatggacattacctaatttgaataggaaaggtgttggtgaagggtggaaaggttttatata |
6456729 |
T |
|
| Q |
393 |
tgcattgcaaggaatttatgataa |
416 |
Q |
| |
|
||| || |||| | ||||||||| |
|
|
| T |
6456728 |
tgctatggaaggtacttatgataa |
6456705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 6516612 - 6516746
Alignment:
| Q |
75 |
tgcatcgacacttacatcattggaaattcttgctgctaaaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaat |
174 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| | ||||||||||||||||| ||| || | ||| | ||||| ||||| ||||||||||| ||| |
|
|
| T |
6516612 |
tgcatcaacactaacatcattggaaattcttggaaccaaaatgtggtggcatgttaaaaagaatgggaaattgtatgatgaagagtttacaaaagagaat |
6516711 |
T |
|
| Q |
175 |
aggatgatgggagttctatggtctaacaagagaga |
209 |
Q |
| |
|
||||| ||||| || | ||||||| |||||||| |
|
|
| T |
6516712 |
aggatagtgggaattttgaggtctaataagagaga |
6516746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 416
Target Start/End: Original strand, 6521255 - 6521419
Alignment:
| Q |
252 |
gcttggaattcagctcctaccattgattcctatttctcaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgcttta |
351 |
Q |
| |
|
|||||| |||||| | |||||||| |||||||||| || | |||||||| |||||||| | ||||||||| ||||||| ||| |||| || ||| |
|
|
| T |
6521255 |
gcttggcattcaggttttaccattgcttcctatttcagaaatgttgttttctgatgttgaatttgtgaaggatgttgtggaatgggtgttgcctgatttg |
6521354 |
T |
|
| Q |
352 |
aaaagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataa |
416 |
Q |
| |
|
|||| || ||||||| ||||||||||| || ||||| ||||| || | |||||||||||||| |
|
|
| T |
6521355 |
gaaagtgatggtgttggtgaaggatggaagggatttgtgtatgctttaaagggaatttatgataa |
6521419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 1846173 - 1846220
Alignment:
| Q |
313 |
tatgtgaaggaacttgtggagtggacattgcttgctttaaaaagggaa |
360 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
1846173 |
tatgtgaagggacttgtggagtcgacattacttgctttgaaaagggaa |
1846220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 1836144 - 1836206
Alignment:
| Q |
193 |
tggtctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggctt |
255 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||| |||| |||||||||||| ||||| |
|
|
| T |
1836144 |
tggtctaacaaaagagacagtggtctatggtttggtccagctgagtggaaagaatgtcggctt |
1836206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 1847024 - 1847082
Alignment:
| Q |
218 |
tatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattg |
276 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
1847024 |
tatggtttggtccggctcagtggaaagaatgtcggctcggaattcagctcttaccattg |
1847082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 46383152 - 46382867
Alignment:
| Q |
17 |
catactattcagcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcatt-ggaaattcttgctgctaaaa |
115 |
Q |
| |
|
|||||||||| ||||| |||||| |||| |||||| |||||||||||||| ||| | ||| |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
46383152 |
catactattctgcagctttgatcagtattgcatatgacgatgcagaactcgtagcaactgcttcgacacttacaccatttggaaattcttgctgctaaaa |
46383053 |
T |
|
| Q |
116 |
tgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatgatgggagttctatggtctaacaagagagacagtgg |
215 |
Q |
| |
|
||||||||||||| |||| || |||| | ||||| ||| || | |||| |||| | | || || | || ||||||||||| ||||||||||| |
|
|
| T |
46383052 |
tgtggtggcatgtgaaaggaaaagtgaatatgtatgataaagtgttcagtgaagagaataaggtaattggtatactttggtctaacaaaagagacagtgg |
46382953 |
T |
|
| Q |
216 |
attatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctcaagttttgtttt |
301 |
Q |
| |
|
||||||||| ||| ||| ||||| ||| |||| ||||| ||||||||| |||||||| ||||||||||| |||| ||||||| |
|
|
| T |
46382952 |
tctatggtttggtccagctaagtggaaggaacgtagccttgggattcagctcttaccattgtttcctatttctgaagtcttgtttt |
46382867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 3754632 - 3754692
Alignment:
| Q |
374 |
gatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaa |
434 |
Q |
| |
|
|||||||||| ||| ||||| | |||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
3754632 |
gatggaaagggtttatctattctttgcaaggaatttatgataaagaaaatgcattgaagaa |
3754692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 46383743 - 46383634
Alignment:
| Q |
17 |
catactattcagcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcattggaaattcttgctgctaaaat |
116 |
Q |
| |
|
||||| |||| ||||| |||||| ||||| |||| || ||||||||||| |||| |||||||||||||||| ||||| || ||| ||| ||||| |
|
|
| T |
46383743 |
catacaattctgcagccttgatcaatatgggatatgacaatgcagaactcgtggcgactgcatcgacacttacacagttggatatcctttctg--aaaat |
46383646 |
T |
|
| Q |
117 |
gtggtggcatgt |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46383645 |
gtggtggcatgt |
46383634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 35244508 - 35244641
Alignment:
| Q |
82 |
acacttacatcattggaaattcttgctgctaaaatgtggtggcatgtaaaagagggagagaatctctatgaggaagattttacaaaagaaaataggatga |
181 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||||||| ||| || | | ||| | ||||| |||||||||||||||| |||||||| | |
|
|
| T |
35244508 |
acacttgcatcattggaaatttgtgctgctaaattgtggtggcatgttaaaaagagtggaaatatgtatgaaaaagattttacaaaagagaataggatca |
35244607 |
T |
|
| Q |
182 |
tgggagttctatggtctaacaagagagacagtgg |
215 |
Q |
| |
|
|||||||| | |||||||| ||||| || ||||| |
|
|
| T |
35244608 |
tgggagttttgtggtctaataagagggatagtgg |
35244641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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