View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19921_low_7 (Length: 447)
Name: NF19921_low_7
Description: NF19921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19921_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 188 - 430
Target Start/End: Original strand, 44870182 - 44870416
Alignment:
| Q |
188 |
tgtgccattctttatgtttccatgagccgtgtagacacaggacttgatgtgtttatatggaagtatgtccttatggctgcaaaatgcttgacaatttctg |
287 |
Q |
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| T |
44870182 |
tgtgccattctttatgtttccatgagccgtgtagacacaggactggatgtgtttatatggaagtatgtccttatggctgcaaaatgcttgacaatttctg |
44870281 |
T |
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| Q |
288 |
ctatctgtgagaaggggggacatttgatattttattcttgtggttgttgacttgaaccaagtcttcagttctgttttgaacagcttggaaatcagaaagn |
387 |
Q |
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| T |
44870282 |
ctatctgtgaggaggggggacatttgatattttattcttgtggttgttgacttgaaccaagtcttcagttctgttttgaacagcttggaaatcagaaa-- |
44870379 |
T |
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| Q |
388 |
nnnnnnnnnngagcatataaaattaatgttcaaaatttgtaag |
430 |
Q |
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| T |
44870380 |
------aaaagagcatataaaattaatgttcaaaatttgtaag |
44870416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 44869972 - 44870147
Alignment:
| Q |
15 |
taaattttgatcctgctcttttgtcgatgccgggtcccagtcttcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
114 |
Q |
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| T |
44869972 |
taaattttgatcctgctcttttgtcgatgccgggtcccagtcttcccaatttttatctacaaactcagtgccctcaaaacaattctggattctcatttcc |
44870071 |
T |
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| Q |
115 |
taacctgataggtacggaacattgtaatgtctatgtatgataacggatatgaaattgaatcaacaggtgtttctgt |
190 |
Q |
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| T |
44870072 |
taacctgataggtacggaacattgtaatgtctatgtatgataacggatatgaaattgaatcaacaggtgtttctgt |
44870147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 44859247 - 44859335
Alignment:
| Q |
195 |
ttctttatgtttccatgagccgtgtagacacaggacttgatgtgtttatatggaagtatgtccttatggctgcaaaatgcttgacaatt |
283 |
Q |
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| T |
44859247 |
ttctgtatgttagcatgagccgtgtagacacaggactagatgtgtttatatggaaatatgtccttatggctgcacaatgcttgacaatt |
44859335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 44859086 - 44859147
Alignment:
| Q |
54 |
gtcttcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcct |
115 |
Q |
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| T |
44859086 |
gtcttcccattttttatctacaatctcagtgccctaagaacaactctggattctcatttcct |
44859147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 44833739 - 44833795
Alignment:
| Q |
58 |
tcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
114 |
Q |
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| T |
44833739 |
tcccatttttaatctacaaactcagtgccctcaaaacaactctggattcttatttcc |
44833795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 44859598 - 44859663
Alignment:
| Q |
317 |
ttttattcttgtggttgttgacttgaacc-aagtcttcagttctgttttgaacagcttggaaatca |
381 |
Q |
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| T |
44859598 |
ttttattcttgtggttgttgacttgaacctaagtcttcctttgtgttttgaacagcttggacatca |
44859663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 44846439 - 44846495
Alignment:
| Q |
58 |
tcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
114 |
Q |
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| T |
44846439 |
tcccattttttatctacaaactcagtgccctcggtacaactttggatactcatttcc |
44846495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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