View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19922_high_13 (Length: 372)
Name: NF19922_high_13
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 159 - 372
Target Start/End: Original strand, 31111636 - 31111849
Alignment:
| Q |
159 |
tctttaaactttagccattcgtcctcaacaatttccatcgccttttctctacaagaacgtgcaaagcaaaaatcaccaagcataattctttcagcactca |
258 |
Q |
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| T |
31111636 |
tctttaaactttagccattcgtcctcaacaatttccatcgccttttctctacaagaacgtgcaaagcaaaaatcaccaagcataattctttcagcactca |
31111735 |
T |
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| Q |
259 |
gtagcacagttagacgtccttaatgtgatgggtgtgctcacagacattgtcaacctactccaacaatagaatgcgtgtctcgctcaagtagaagaaaatc |
358 |
Q |
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| T |
31111736 |
gtagcacagttagacgtccttaatgtgatgggtgtgctcacaaacattgtcaacctactccaacaatagaatgcgtgtctcactcaagtagaagaaaatc |
31111835 |
T |
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| Q |
359 |
aatataaaatttct |
372 |
Q |
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| T |
31111836 |
aatataaaatttct |
31111849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 31109558 - 31109629
Alignment:
| Q |
11 |
cataggctaaaatgt-aacctctttgttgagaaatgcaaaagattaagaatttatcattatttaaaagttct |
81 |
Q |
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| T |
31109558 |
cataggctaaaatgttaacctctttgttgagaaatgcaaaagattaagaatttatcattatttaaaagttct |
31109629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 4688961 - 4689002
Alignment:
| Q |
39 |
agaaatgcaaaagattaagaatttatcattatttaaaagttc |
80 |
Q |
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| T |
4688961 |
agaaatgcaaaagattaaaattttatcattattaaaaagttc |
4689002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 38926235 - 38926194
Alignment:
| Q |
39 |
agaaatgcaaaagattaagaatttatcattatttaaaagttc |
80 |
Q |
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| T |
38926235 |
agaaatgtaaaagattaagattttatcattatataaaagttc |
38926194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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