View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19922_high_14 (Length: 371)
Name: NF19922_high_14
Description: NF19922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19922_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 1706467 - 1706116
Alignment:
| Q |
8 |
aagaatatttaagggatacctatactagtcaagtaaattagcaagaatcatatattttcaattcaacccctatatatagataggaccaccataatca--- |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1706467 |
aagattatttaagggatacctatactagtcaagtaaattagcaaaaatcatatattttcaattcaacccctatatatagataggaccaccataatcaatc |
1706368 |
T |
|
| Q |
105 |
-tacacaattagggcaccgagctaaacgtcacttgtttttggtcctttataccatttctctatatgtacttagtttattgatgtcttctctttgtgctca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1706367 |
atacacaattagggcaccgagctaaacgtcacttgtttttggtcctttataccatttctctatatgtacttagtttattgatgtcttctctttgtgctca |
1706268 |
T |
|
| Q |
204 |
atatatttaaatatttggaaactnnnnnnnctaccatgcaattccaaactcagggacggagatttttggagcaccaaagttagctagaatttgttaataa |
303 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1706267 |
atatatttaaatatttggaaactaaaaaaactactatgc-attccaaactcagggacggagatttttggagcaccaaagttagctagaatttgttaataa |
1706169 |
T |
|
| Q |
304 |
tccatgagctttatacacatatcatt-ttttactcatttttatccattcgtta |
355 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1706168 |
tccatgagctttatacacatatcattattttactcatttttatccattcgtta |
1706116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University